Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DJK entry

There is 1 chain in PDB entry 7DJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 393PRO 907
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7DJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
431 448Right-handed alpha
Helix 2
AA2
A
463 467Right-handed 310
Helix 3
AA3
A
468 479Right-handed alpha
Helix 4
AA4
A
491 498Right-handed alpha
Helix 5
AA5
A
523 541Right-handed alpha
Helix 6
AA6
A
553 558Right-handed 310
Helix 7
AA7
A
559 564Right-handed alpha
Helix 8
AA8
A
586 589Right-handed 310
Helix 9
AA9
A
642 644Right-handed 310
Helix 10
AB1
A
677 679Right-handed 310
Helix 11
AB2
A
732 736Right-handed 310
Helix 12
AB3
A
798 800Right-handed 310
Helix 13
AB4
A
821 824Right-handed 310
Helix 14
AB5
A
851 855Right-handed 310
Helix 15
AB6
A
888 892Right-handed 310
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There are 7 sheets in PDB entry 7DJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
485 486anti-parallel
Strand 3
A
453 459parallel
Strand 4
A
421 427parallel
Strand 5
A
504 508anti-parallel
Strand 6
A
514 519anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 575first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
590 594anti-parallel
Strand 4
A
600 604anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
656 662anti-parallel
Strand 3
A
646 651anti-parallel
Strand 4
A
636 641anti-parallel
Strand 5
A
628 631anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
715 720anti-parallel
Strand 3
A
705 710anti-parallel
Strand 4
A
695 700anti-parallel
Strand 5
A
688 690anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
745 746first strand
Strand 2
A
752 757anti-parallel
Strand 3
A
762 767anti-parallel
Strand 4
A
773 778anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
795 796first strand
Strand 2
A
835 840anti-parallel
Strand 3
A
825 829anti-parallel
Strand 4
A
816 820anti-parallel
Strand 5
A
807 810anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
864 865first strand
Strand 2
A
870 875anti-parallel
Strand 3
A
880 885anti-parallel
Strand 4
A
894 896anti-parallel
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