Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DJL entry

There are 3 chains in PDB entry 7DJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 562	PRO 1044
A	ALA 562	ARG 1042
B	ALA 562	VAL 926

There are 22 helices in PDB entry 7DJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	586	589	Right-handed 310
Helix 2	AA2	C	677	679	Right-handed 310
Helix 3	AA3	C	732	736	Right-handed 310
Helix 4	AA4	C	798	800	Right-handed 310
Helix 5	AA5	C	821	824	Right-handed 310
Helix 6	AA6	C	851	855	Right-handed 310
Helix 7	AA7	C	876	879	Right-handed 310
Helix 8	AA8	C	887	889	Right-handed 310
Helix 9	AA9	A	586	589	Right-handed 310
Helix 10	AB1	A	643	645	Right-handed 310
Helix 11	AB2	A	677	679	Right-handed 310
Helix 12	AB3	A	732	736	Right-handed 310
Helix 13	AB4	A	798	800	Right-handed 310
Helix 14	AB5	A	821	824	Right-handed 310
Helix 15	AB6	A	876	879	Right-handed 310
Helix 16	AB7	A	887	891	Right-handed 310
Helix 17	AB8	B	586	589	Right-handed 310
Helix 18	AB9	B	677	679	Right-handed 310
Helix 19	AC1	B	732	736	Right-handed 310
Helix 20	AC2	B	798	800	Right-handed 310
Helix 21	AC3	B	821	824	Right-handed 310
Helix 22	AC4	B	876	879	Right-handed 310

There are 27 sheets in PDB entry 7DJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	575	first strand
Strand 2	C	580	585	anti-parallel
Strand 3	C	590	595	anti-parallel
Strand 4	C	600	604	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	616	first strand
Strand 2	C	656	662	anti-parallel
Strand 3	C	646	651	anti-parallel
Strand 4	C	636	641	anti-parallel
Strand 5	C	625	631	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	672	675	first strand
Strand 2	C	715	720	anti-parallel
Strand 3	C	705	710	anti-parallel
Strand 4	C	695	700	anti-parallel
Strand 5	C	688	690	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	745	746	first strand
Strand 2	C	752	757	anti-parallel
Strand 3	C	762	767	anti-parallel
Strand 4	C	773	777	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	795	796	first strand
Strand 2	C	835	840	anti-parallel
Strand 3	C	825	829	anti-parallel
Strand 4	C	816	820	anti-parallel
Strand 5	C	809	810	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	864	865	first strand
Strand 2	C	870	875	anti-parallel
Strand 3	C	880	885	anti-parallel
Strand 4	C	894	896	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	923	927	first strand
Strand 2	C	1013	1027	parallel
Strand 3	C	995	1006	anti-parallel
Strand 4	C	949	950	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	931	933	first strand
Strand 2	C	1013	1027	parallel
Strand 3	C	995	1006	anti-parallel
Strand 4	C	957	962	anti-parallel
Strand 5	C	974	976	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	968	970	first strand
Strand 2	C	982	989	anti-parallel
Strand 3	C	935	943	anti-parallel
Strand 4	C	1034	1038	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	580	585	anti-parallel
Strand 3	A	590	594	anti-parallel
Strand 4	A	600	604	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	616	first strand
Strand 2	A	656	661	anti-parallel
Strand 3	A	646	651	anti-parallel
Strand 4	A	636	641	anti-parallel
Strand 5	A	625	631	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	715	720	anti-parallel
Strand 3	A	705	710	anti-parallel
Strand 4	A	695	700	anti-parallel
Strand 5	A	688	690	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	752	757	anti-parallel
Strand 3	A	762	767	anti-parallel
Strand 4	A	773	777	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	796	first strand
Strand 2	A	835	840	anti-parallel
Strand 3	A	825	829	anti-parallel
Strand 4	A	816	820	anti-parallel
Strand 5	A	807	810	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	851	first strand
Strand 2	A	893	896	anti-parallel
Strand 3	A	880	885	anti-parallel
Strand 4	A	870	875	anti-parallel
Strand 5	A	864	865	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	927	first strand
Strand 2	A	1013	1027	parallel
Strand 3	A	995	1006	anti-parallel
Strand 4	A	949	950	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	933	first strand
Strand 2	A	1013	1027	parallel
Strand 3	A	995	1006	anti-parallel
Strand 4	A	957	962	anti-parallel
Strand 5	A	974	976	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	968	970	first strand
Strand 2	A	982	989	anti-parallel
Strand 3	A	935	943	anti-parallel
Strand 4	A	1034	1038	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	580	585	anti-parallel
Strand 3	B	590	594	anti-parallel
Strand 4	B	600	604	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	616	first strand
Strand 2	B	656	662	anti-parallel
Strand 3	B	646	651	anti-parallel
Strand 4	B	636	641	anti-parallel
Strand 5	B	625	631	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	715	720	anti-parallel
Strand 3	B	705	710	anti-parallel
Strand 4	B	695	700	anti-parallel
Strand 5	B	688	690	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	746	first strand
Strand 2	B	752	757	anti-parallel
Strand 3	B	762	767	anti-parallel
Strand 4	B	773	777	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	796	first strand
Strand 2	B	835	840	anti-parallel
Strand 3	B	825	829	anti-parallel
Strand 4	B	816	820	anti-parallel
Strand 5	B	809	810	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	851	first strand
Strand 2	B	893	896	anti-parallel
Strand 3	B	880	885	anti-parallel
Strand 4	B	870	875	anti-parallel
Strand 5	B	864	865	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	927	first strand
Strand 2	B	1013	1027	parallel
Strand 3	B	995	1006	anti-parallel
Strand 4	B	949	950	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	931	933	first strand
Strand 2	B	1013	1027	parallel
Strand 3	B	995	1006	anti-parallel
Strand 4	B	957	962	anti-parallel
Strand 5	B	974	976	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	968	970	first strand
Strand 2	B	982	989	anti-parallel
Strand 3	B	935	943	anti-parallel
Strand 4	B	1034	1038	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJL