Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DJM entry

There is 1 chain in PDB entry 7DJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0THR 1038
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7DJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
586 589Right-handed 310
Helix 2
AA2
A
642 644Right-handed 310
Helix 3
AA3
A
677 679Right-handed 310
Helix 4
AA4
A
701 704Right-handed 310
Helix 5
AA5
A
732 734Right-handed 310
Helix 6
AA6
A
758 760Right-handed 310
Helix 7
AA7
A
798 800Right-handed 310
Helix 8
AA8
A
821 824Right-handed 310
Helix 9
AA9
A
853 855Right-handed 310
Helix 10
AB1
A
876 879Right-handed 310
Helix 11
AB2
A
887 891Right-handed 310
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There are 11 sheets in PDB entry 7DJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
590 595anti-parallel
Strand 4
A
600 604anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
656 662anti-parallel
Strand 3
A
646 651anti-parallel
Strand 4
A
636 641anti-parallel
Strand 5
A
628 631anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
715 720anti-parallel
Strand 3
A
705 710anti-parallel
Strand 4
A
695 700anti-parallel
Strand 5
A
688 690anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
736 737anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
745 746first strand
Strand 2
A
752 757anti-parallel
Strand 3
A
762 767anti-parallel
Strand 4
A
773 778anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
795 796first strand
Strand 2
A
835 840anti-parallel
Strand 3
A
825 830anti-parallel
Strand 4
A
816 820anti-parallel
Strand 5
A
807 810anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 851first strand
Strand 2
A
893 896anti-parallel
Strand 3
A
880 885anti-parallel
Strand 4
A
870 875anti-parallel
Strand 5
A
864 865anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
924 927first strand
Strand 2
A
1016 1027parallel
Strand 3
A
931 933parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
924 927first strand
Strand 2
A
1016 1027parallel
Strand 3
A
995 1002anti-parallel
Strand 4
A
957 962anti-parallel
Strand 5
A
974 976anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
968 970first strand
Strand 2
A
982 989anti-parallel
Strand 3
A
935 942anti-parallel
Strand 4
A
1034 1037parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 950first strand
Strand 2
A
1005 1006anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il