Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DJQ entry

There are 5 chains in PDB entry 7DJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 263ILE 267
B
 MET 1VAL 41
B
 CYS 43ALA 301
A
 SER 0VAL 41
A
 CYS 43ALA 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7DJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 11Right-handed 310
Helix 2
AA2
B
41 56Right-handed alpha
Helix 3
AA3
B
71 85Right-handed alpha
Helix 4
AA4
B
97 107Right-handed alpha
Helix 5
AA5
B
115 117Right-handed 310
Helix 6
AA6
B
118 134Right-handed alpha
Helix 7
AA7
B
147 156Right-handed alpha
Helix 8
AA8
B
156 165Right-handed alpha
Helix 9
AA9
B
179 191Right-handed alpha
Helix 10
AB1
B
208 216Right-handed alpha
Helix 11
AB2
B
239 243Right-handed 310
Helix 12
AB3
B
250 266Right-handed alpha
Helix 13
AB4
B
270 285Right-handed alpha
Helix 14
AB5
A
6 11Right-handed 310
Helix 15
AB6
A
36 41Right-handed 310
Helix 16
AB7
A
42 55Right-handed alpha
Helix 17
AB8
A
71 85Right-handed alpha
Helix 18
AB9
A
97 107Right-handed alpha
Helix 19
AC1
A
115 117Right-handed 310
Helix 20
AC2
A
118 133Right-handed alpha
Helix 21
AC3
A
134 136Right-handed 310
Helix 22
AC4
A
147 156Right-handed alpha
Helix 23
AC5
A
156 165Right-handed alpha
Helix 24
AC6
A
179 191Right-handed alpha
Helix 25
AC7
A
208 216Right-handed alpha
Helix 26
AC8
A
239 243Right-handed 310
Helix 27
AC9
A
250 266Right-handed alpha
Helix 28
AD1
A
270 285Right-handed alpha
Helix 29
AD2
A
286 290Right-handed 310
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There are 4 sheets in PDB entry 7DJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
A
16 18parallel
Strand 3
A
28 32anti-parallel
Strand 4
A
294 298parallel
Strand 5
A
171 175parallel
Strand 6
A
198 204parallel
Strand 7
A
245 249parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
198 204parallel
Strand 3
B
171 175parallel
Strand 4
B
294 298parallel
Strand 5
B
28 32parallel
Strand 6
B
16 18anti-parallel
Strand 7
A
3 4parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
88 93parallel
Strand 3
B
64 68parallel
Strand 4
B
138 139parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
87 93parallel
Strand 3
A
64 68parallel
Strand 4
A
138 139parallel
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