Analysis of interatomic Contacts of Structural Units in PDB entry:
7DJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DJZ entry

There are 3 chains in PDB entry 7DJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 225
B
 GLU 1CYS 213
C
 ASN 334SER 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7DJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 91Right-handed 310
Helix 2
AA2
A
197 199Right-handed 310
Helix 3
AA3
A
211 214Right-handed 310
Helix 4
AA4
B
79 83Right-handed 310
Helix 5
AA5
B
120 126Right-handed alpha
Helix 6
AA6
B
182 187Right-handed alpha
Helix 7
AA7
C
337 343Right-handed alpha
Helix 8
AA8
C
365 370Right-handed alpha
Helix 9
AA9
C
383 389Right-handed 310
Helix 10
AB1
C
405 410Right-handed 310
Helix 11
AB2
C
416 422Right-handed alpha
Helix 12
AB3
C
438 443Right-handed alpha
Helix 13
AB4
C
502 505Right-handed 310
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There are 15 sheets in PDB entry 7DJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
57 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
109 113anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
145 155anti-parallel
Strand 3
A
186 195anti-parallel
Strand 4
A
173 175anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
145 155anti-parallel
Strand 3
A
186 195anti-parallel
Strand 4
A
179 180anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
215 220anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 66anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
101 105parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
101 105parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
96 97anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
158 162anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
143 149anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
204 209anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 358first strand
Strand 2
C
394 403anti-parallel
Strand 3
C
507 516anti-parallel
Strand 4
C
431 437anti-parallel
Strand 5
C
376 380anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 362first strand
Strand 2
C
524 525parallel
Strand 3
C
391 392anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
473 474first strand
Strand 2
C
488 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il