Analysis of interatomic Contacts of Structural Units in PDB entry:
7DK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DK8 entry

There is 1 chain in PDB entry 7DK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23PRO 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7DK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
66 74Right-handed alpha
Helix 5
AA5
A
78 91Right-handed alpha
Helix 6
AA6
A
123 142Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
173 180Right-handed alpha
Helix 9
AA9
A
190 194Right-handed 310
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
206 221Right-handed alpha
Helix 12
AB3
A
233 257Right-handed alpha
Helix 13
AB4
A
265 273Right-handed alpha
Helix 14
AB5
A
279 291Right-handed alpha
Helix 15
AB6
A
297 303Right-handed alpha
Helix 16
AB7
A
314 319Right-handed 310
Helix 17
AB8
A
320 329Right-handed alpha
Helix 18
AB9
A
354 358Right-handed 310
Helix 19
AC1
A
383 387Right-handed 310
Helix 20
AC2
A
391 393Right-handed 310
Helix 21
AC3
A
449 460Right-handed alpha
Helix 22
AC4
A
461 462Right-handed 310
Helix 23
AC5
A
463 467Right-handed 310
Helix 24
AC6
A
503 518Right-handed alpha
Helix 25
AC7
A
519 528Right-handed alpha
Helix 26
AC8
A
543 554Right-handed alpha
Helix 27
AC9
A
557 561Right-handed 310
Helix 28
AD1
A
571 579Right-handed alpha
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There are 5 sheets in PDB entry 7DK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 122first strand
Strand 2
A
105 113anti-parallel
Strand 3
A
170 172parallel
Strand 4
A
163 164anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
225 232parallel
Strand 3
A
308 312parallel
Strand 4
A
333 334parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
344 347anti-parallel
Strand 3
A
360 362anti-parallel
Strand 4
A
427 435anti-parallel
Strand 5
A
412 424anti-parallel
Strand 6
A
398 404anti-parallel
Strand 7
A
368 373anti-parallel
Strand 8
A
388 389anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
447 448anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 478first strand
Strand 2
A
485 493anti-parallel
Strand 3
A
536 540parallel
Strand 4
A
581 586anti-parallel
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