Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKB entry

There are 2 chains in PDB entry 7DKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ALA 719
B
 ALA 23ALA 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7DKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
82 93Right-handed alpha
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
145 165Right-handed alpha
Helix 9
AA9
A
178 181Right-handed 310
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
208 213Right-handed alpha
Helix 12
AB3
A
279 289Right-handed alpha
Helix 13
AB4
A
289 312Right-handed alpha
Helix 14
AB5
A
312 344Right-handed alpha
Helix 15
AB6
A
344 363Right-handed alpha
Helix 16
AB7
A
367 380Right-handed alpha
Helix 17
AB8
A
381 383Right-handed 310
Helix 18
AB9
A
387 399Right-handed alpha
Helix 19
AC1
A
400 418Right-handed alpha
Helix 20
AC2
A
419 423Right-handed 310
Helix 21
AC3
A
428 430Right-handed 310
Helix 22
AC4
A
431 442Right-handed alpha
Helix 23
AC5
A
443 446Right-handed 310
Helix 24
AC6
A
447 465Right-handed alpha
Helix 25
AC7
A
466 470Right-handed 310
Helix 26
AC8
A
472 480Right-handed alpha
Helix 27
AC9
A
483 495Right-handed alpha
Helix 28
AD1
A
501 510Right-handed alpha
Helix 29
AD2
A
512 519Right-handed alpha
Helix 30
AD3
A
521 566Right-handed alpha
Helix 31
AD4
A
601 607Right-handed alpha
Helix 32
AD5
A
617 626Right-handed alpha
Helix 33
AD6
A
675 682Right-handed 310
Helix 34
AD7
A
696 706Right-handed alpha
Helix 35
AD8
A
709 716Right-handed alpha
Helix 36
AD9
B
28 30Right-handed 310
Helix 37
AE1
B
31 43Right-handed alpha
Helix 38
AE2
B
47 53Right-handed alpha
Helix 39
AE3
B
58 60Right-handed 310
Helix 40
AE4
B
82 93Right-handed alpha
Helix 41
AE5
B
109 113Right-handed 310
Helix 42
AE6
B
131 141Right-handed alpha
Helix 43
AE7
B
145 165Right-handed alpha
Helix 44
AE8
B
178 181Right-handed 310
Helix 45
AE9
B
201 206Right-handed alpha
Helix 46
AF1
B
208 213Right-handed alpha
Helix 47
AF2
B
279 289Right-handed alpha
Helix 48
AF3
B
289 312Right-handed alpha
Helix 49
AF4
B
312 319Right-handed alpha
Helix 50
AF5
B
319 343Right-handed alpha
Helix 51
AF6
B
344 363Right-handed alpha
Helix 52
AF7
B
364 366Right-handed 310
Helix 53
AF8
B
367 387Right-handed alpha
Helix 54
AF9
B
387 399Right-handed alpha
Helix 55
AG1
B
400 418Right-handed alpha
Helix 56
AG2
B
419 423Right-handed 310
Helix 57
AG3
B
428 430Right-handed 310
Helix 58
AG4
B
431 443Right-handed alpha
Helix 59
AG5
B
447 465Right-handed alpha
Helix 60
AG6
B
466 470Right-handed 310
Helix 61
AG7
B
472 480Right-handed alpha
Helix 62
AG8
B
483 495Right-handed alpha
Helix 63
AG9
B
501 510Right-handed alpha
Helix 64
AH1
B
512 519Right-handed alpha
Helix 65
AH2
B
521 566Right-handed alpha
Helix 66
AH3
B
601 607Right-handed alpha
Helix 67
AH4
B
617 626Right-handed alpha
Helix 68
AH5
B
675 682Right-handed 310
Helix 69
AH6
B
696 706Right-handed alpha
Helix 70
AH7
B
709 717Right-handed alpha
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There are 9 sheets in PDB entry 7DKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
193 199anti-parallel
Strand 6
A
114 115anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
193 199anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 130first strand
Strand 2
A
182 191anti-parallel
Strand 3
A
170 177anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 584first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
658 660anti-parallel
Strand 4
A
666 673anti-parallel
Strand 5
A
691 695anti-parallel
Strand 6
A
641 646anti-parallel
Strand 7
A
598 600anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
593 595anti-parallel
Strand 3
B
593 595anti-parallel
Strand 4
B
588 590anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
78 81anti-parallel
Strand 4
B
224 230anti-parallel
Strand 5
B
193 199anti-parallel
Strand 6
B
114 115anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
193 199anti-parallel
Strand 3
B
224 230anti-parallel
Strand 4
B
244 245anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 130first strand
Strand 2
B
182 191anti-parallel
Strand 3
B
170 177anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 584first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
658 660anti-parallel
Strand 4
B
666 673anti-parallel
Strand 5
B
691 695anti-parallel
Strand 6
B
641 646anti-parallel
Strand 7
B
598 600anti-parallel
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