Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKC entry

There are 2 chains in PDB entry 7DKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ALA 719
B
 ALA 23ALA 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 7DKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
82 93Right-handed alpha
Helix 6
AA6
A
99 104Right-handed alpha
Helix 7
AA7
A
109 113Right-handed 310
Helix 8
AA8
A
131 141Right-handed alpha
Helix 9
AA9
A
145 165Right-handed alpha
Helix 10
AB1
A
178 181Right-handed 310
Helix 11
AB2
A
201 206Right-handed alpha
Helix 12
AB3
A
208 213Right-handed alpha
Helix 13
AB4
A
279 289Right-handed alpha
Helix 14
AB5
A
289 312Right-handed alpha
Helix 15
AB6
A
312 319Right-handed alpha
Helix 16
AB7
A
319 344Right-handed alpha
Helix 17
AB8
A
344 362Right-handed alpha
Helix 18
AB9
A
363 366Right-handed 310
Helix 19
AC1
A
367 380Right-handed alpha
Helix 20
AC2
A
387 399Right-handed alpha
Helix 21
AC3
A
400 417Right-handed alpha
Helix 22
AC4
A
418 423Right-handed 310
Helix 23
AC5
A
428 430Right-handed 310
Helix 24
AC6
A
431 442Right-handed alpha
Helix 25
AC7
A
443 445Right-handed 310
Helix 26
AC8
A
447 464Right-handed alpha
Helix 27
AC9
A
472 480Right-handed alpha
Helix 28
AD1
A
483 495Right-handed alpha
Helix 29
AD2
A
501 509Right-handed alpha
Helix 30
AD3
A
512 519Right-handed alpha
Helix 31
AD4
A
521 566Right-handed alpha
Helix 32
AD5
A
601 607Right-handed alpha
Helix 33
AD6
A
617 626Right-handed alpha
Helix 34
AD7
A
675 682Right-handed 310
Helix 35
AD8
A
696 706Right-handed alpha
Helix 36
AD9
A
709 716Right-handed alpha
Helix 37
AE1
B
28 30Right-handed 310
Helix 38
AE2
B
31 43Right-handed alpha
Helix 39
AE3
B
47 53Right-handed alpha
Helix 40
AE4
B
58 60Right-handed 310
Helix 41
AE5
B
82 93Right-handed alpha
Helix 42
AE6
B
99 104Right-handed alpha
Helix 43
AE7
B
109 113Right-handed 310
Helix 44
AE8
B
131 142Right-handed alpha
Helix 45
AE9
B
145 165Right-handed alpha
Helix 46
AF1
B
178 181Right-handed 310
Helix 47
AF2
B
201 206Right-handed alpha
Helix 48
AF3
B
208 213Right-handed alpha
Helix 49
AF4
B
279 289Right-handed alpha
Helix 50
AF5
B
289 312Right-handed alpha
Helix 51
AF6
B
312 319Right-handed alpha
Helix 52
AF7
B
319 344Right-handed alpha
Helix 53
AF8
B
344 361Right-handed alpha
Helix 54
AF9
B
362 366Right-handed 310
Helix 55
AG1
B
367 380Right-handed alpha
Helix 56
AG2
B
387 399Right-handed alpha
Helix 57
AG3
B
400 417Right-handed alpha
Helix 58
AG4
B
419 423Right-handed 310
Helix 59
AG5
B
428 430Right-handed 310
Helix 60
AG6
B
431 442Right-handed alpha
Helix 61
AG7
B
443 445Right-handed 310
Helix 62
AG8
B
447 464Right-handed alpha
Helix 63
AG9
B
472 480Right-handed alpha
Helix 64
AH1
B
483 495Right-handed alpha
Helix 65
AH2
B
501 511Right-handed alpha
Helix 66
AH3
B
512 519Right-handed alpha
Helix 67
AH4
B
521 549Right-handed alpha
Helix 68
AH5
B
550 566Right-handed alpha
Helix 69
AH6
B
601 607Right-handed alpha
Helix 70
AH7
B
617 626Right-handed alpha
Helix 71
AH8
B
675 682Right-handed 310
Helix 72
AH9
B
696 706Right-handed alpha
Helix 73
AI1
B
709 716Right-handed alpha
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There are 9 sheets in PDB entry 7DKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
193 199anti-parallel
Strand 6
A
114 115anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
193 199anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 130first strand
Strand 2
A
182 191anti-parallel
Strand 3
A
170 177anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 584first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
658 660anti-parallel
Strand 4
A
666 673anti-parallel
Strand 5
A
691 695anti-parallel
Strand 6
A
641 646anti-parallel
Strand 7
A
598 600anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
593 595anti-parallel
Strand 3
B
593 595anti-parallel
Strand 4
B
588 590anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
78 81anti-parallel
Strand 4
B
224 230anti-parallel
Strand 5
B
193 199anti-parallel
Strand 6
B
114 115anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
193 199anti-parallel
Strand 3
B
224 230anti-parallel
Strand 4
B
244 245anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 130first strand
Strand 2
B
182 191anti-parallel
Strand 3
B
170 177anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 584first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
658 660anti-parallel
Strand 4
B
666 673anti-parallel
Strand 5
B
691 695anti-parallel
Strand 6
B
641 646anti-parallel
Strand 7
B
598 600anti-parallel
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