Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKG entry

There are 2 chains in PDB entry 7DKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 23TYR 496
B
 ASN 21TYR 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7DKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 46Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
113 123Right-handed alpha
Helix 5
AA5
A
129 148Right-handed alpha
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
160 167Right-handed 310
Helix 8
AA8
A
176 183Right-handed alpha
Helix 9
AA9
A
185 199Right-handed alpha
Helix 10
AB1
A
216 230Right-handed alpha
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
249 266Right-handed alpha
Helix 13
AB4
A
277 288Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
301 309Right-handed alpha
Helix 16
AB7
A
321 334Right-handed alpha
Helix 17
AB8
A
340 349Right-handed alpha
Helix 18
AB9
A
354 358Right-handed 310
Helix 19
AC1
A
370 374Right-handed 310
Helix 20
AC2
A
439 451Right-handed alpha
Helix 21
AC3
A
465 469Right-handed 310
Helix 22
AC4
B
23 48Right-handed alpha
Helix 23
AC5
B
50 55Right-handed alpha
Helix 24
AC6
B
56 71Right-handed alpha
Helix 25
AC7
B
113 123Right-handed alpha
Helix 26
AC8
B
129 148Right-handed alpha
Helix 27
AC9
B
150 157Right-handed alpha
Helix 28
AD1
B
160 167Right-handed 310
Helix 29
AD2
B
176 183Right-handed alpha
Helix 30
AD3
B
185 199Right-handed alpha
Helix 31
AD4
B
216 230Right-handed alpha
Helix 32
AD5
B
232 243Right-handed alpha
Helix 33
AD6
B
249 266Right-handed alpha
Helix 34
AD7
B
277 288Right-handed alpha
Helix 35
AD8
B
290 295Right-handed alpha
Helix 36
AD9
B
301 309Right-handed alpha
Helix 37
AE1
B
321 334Right-handed alpha
Helix 38
AE2
B
340 349Right-handed alpha
Helix 39
AE3
B
354 358Right-handed 310
Helix 40
AE4
B
370 374Right-handed 310
Helix 41
AE5
B
438 451Right-handed alpha
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There are 7 sheets in PDB entry 7DKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
111 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
463 464anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 100first strand
Strand 2
B
103 112anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
463 464anti-parallel
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