Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKH entry

There are 5 chains in PDB entry 7DKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 10LEU 922
B
 GLN 5ARG 103
C
 ASP 2SER 53
D
 LYS 18PHE 68
E
 TYR 10ASN 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are180 helices in PDB entry 7DKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 52Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
87 89Right-handed 310
Helix 5
AA5
A
90 107Right-handed alpha
Helix 6
AA6
A
112 134Right-handed alpha
Helix 7
AA7
A
137 151Right-handed alpha
Helix 8
AA8
A
153 170Right-handed alpha
Helix 9
AA9
A
182 196Right-handed alpha
Helix 10
AB1
A
198 213Right-handed alpha
Helix 11
AB2
A
219 231Right-handed alpha
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
251 269Right-handed alpha
Helix 14
AB5
A
272 292Right-handed alpha
Helix 15
AB6
A
297 311Right-handed alpha
Helix 16
AB7
A
313 324Right-handed alpha
Helix 17
AB8
A
325 332Right-handed 310
Helix 18
AB9
A
333 351Right-handed alpha
Helix 19
AC1
A
353 368Right-handed alpha
Helix 20
AC2
A
371 385Right-handed alpha
Helix 21
AC3
A
387 400Right-handed alpha
Helix 22
AC4
A
405 426Right-handed alpha
Helix 23
AC5
A
430 455Right-handed alpha
Helix 24
AC6
A
461 475Right-handed alpha
Helix 25
AC7
A
477 495Right-handed alpha
Helix 26
AC8
A
500 515Right-handed alpha
Helix 27
AC9
A
516 530Right-handed alpha
Helix 28
AD1
A
536 550Right-handed alpha
Helix 29
AD2
A
554 569Right-handed alpha
Helix 30
AD3
A
572 586Right-handed alpha
Helix 31
AD4
A
590 603Right-handed alpha
Helix 32
AD5
A
608 623Right-handed alpha
Helix 33
AD6
A
627 642Right-handed alpha
Helix 34
AD7
A
646 666Right-handed alpha
Helix 35
AD8
A
669 674Right-handed alpha
Helix 36
AD9
A
674 694Right-handed alpha
Helix 37
AE1
A
697 711Right-handed alpha
Helix 38
AE2
A
713 726Right-handed alpha
Helix 39
AE3
A
730 744Right-handed alpha
Helix 40
AE4
A
746 760Right-handed alpha
Helix 41
AE5
A
766 784Right-handed alpha
Helix 42
AE6
A
787 809Right-handed alpha
Helix 43
AE7
A
811 835Right-handed alpha
Helix 44
AE8
A
837 841Right-handed 310
Helix 45
AE9
A
842 865Right-handed alpha
Helix 46
AF1
A
875 885Right-handed alpha
Helix 47
AF2
A
886 920Right-handed alpha
Helix 48
AF3
B
32 36Right-handed 310
Helix 49
AF4
B
39 51Right-handed alpha
Helix 50
AF5
B
52 56Right-handed 310
Helix 51
AF6
B
67 71Right-handed 310
Helix 52
AF7
B
79 85Right-handed 310
Helix 53
AF8
B
92 97Right-handed alpha
Helix 54
AF9
B
98 100Right-handed 310
Helix 55
AG1
C
7 16Right-handed alpha
Helix 56
AG2
C
24 29Right-handed 310
Helix 57
AG3
C
36 46Right-handed alpha
Helix 58
AG4
C
46 51Right-handed alpha
Helix 59
AG5
D
19 23Right-handed 310
Helix 60
AG6
D
24 44Right-handed alpha
Helix 61
AG7
D
45 49Right-handed 310
Helix 62
AG8
D
51 59Right-handed alpha
Helix 63
AG9
E
42 52Right-handed alpha
Helix 64
AH1
E
55 69Right-handed alpha
Helix 65
AH2
E
71 83Right-handed alpha
Helix 66
AH3
E
87 89Right-handed 310
Helix 67
AH4
E
90 107Right-handed alpha
Helix 68
AH5
E
112 134Right-handed alpha
Helix 69
AH6
E
137 151Right-handed alpha
Helix 70
AH7
E
153 171Right-handed alpha
Helix 71
AH8
E
182 196Right-handed alpha
Helix 72
AH9
E
198 213Right-handed alpha
Helix 73
AI1
E
219 231Right-handed alpha
Helix 74
AI2
E
233 248Right-handed alpha
Helix 75
AI3
E
251 269Right-handed alpha
Helix 76
AI4
E
272 292Right-handed alpha
Helix 77
AI5
E
297 311Right-handed alpha
Helix 78
AI6
E
313 324Right-handed alpha
Helix 79
AI7
E
325 332Right-handed 310
Helix 80
AI8
E
333 351Right-handed alpha
Helix 81
AI9
E
353 368Right-handed alpha
Helix 82
AJ1
E
371 385Right-handed alpha
Helix 83
AJ2
E
387 400Right-handed alpha
Helix 84
AJ3
E
405 426Right-handed alpha
Helix 85
AJ4
E
430 455Right-handed alpha
Helix 86
AJ5
E
461 475Right-handed alpha
Helix 87
AJ6
E
477 495Right-handed alpha
Helix 88
AJ7
E
500 515Right-handed alpha
Helix 89
AJ8
E
516 530Right-handed alpha
Helix 90
AJ9
E
535 550Right-handed alpha
Helix 91
AK1
E
554 569Right-handed alpha
Helix 92
AK2
E
572 586Right-handed alpha
Helix 93
AK3
E
590 603Right-handed alpha
Helix 94
AK4
E
608 622Right-handed alpha
Helix 95
AK5
E
630 642Right-handed alpha
Helix 96
AK6
E
646 666Right-handed alpha
Helix 97
AK7
E
670 694Right-handed alpha
Helix 98
AK8
E
697 711Right-handed alpha
Helix 99
AK9
E
713 726Right-handed alpha
Helix 100
AL1
E
730 744Right-handed alpha
Helix 101
AL2
E
746 760Right-handed alpha
Helix 102
AL3
E
766 784Right-handed alpha
Helix 103
AL4
E
787 809Right-handed alpha
Helix 104
AL5
E
811 835Right-handed alpha
Helix 105
AL6
E
837 841Right-handed 310
Helix 106
AL7
E
842 866Right-handed alpha
Helix 107
AL8
E
875 885Right-handed alpha
Helix 108
AL9
E
887 920Right-handed alpha
Helix 109
AM1
F
32 36Right-handed 310
Helix 110
AM2
F
39 51Right-handed alpha
Helix 111
AM3
F
52 56Right-handed 310
Helix 112
AM4
F
67 71Right-handed 310
Helix 113
AM5
F
92 97Right-handed alpha
Helix 114
AM6
F
98 100Right-handed 310
Helix 115
AM7
G
7 15Right-handed alpha
Helix 116
AM8
G
24 29Right-handed 310
Helix 117
AM9
G
36 46Right-handed alpha
Helix 118
AN1
G
46 51Right-handed alpha
Helix 119
AN2
H
24 44Right-handed alpha
Helix 120
AN3
H
45 49Right-handed 310
Helix 121
AN4
H
51 59Right-handed alpha
Helix 122
AN5
I
42 52Right-handed alpha
Helix 123
AN6
I
55 69Right-handed alpha
Helix 124
AN7
I
71 83Right-handed alpha
Helix 125
AN8
I
90 107Right-handed alpha
Helix 126
AN9
I
112 134Right-handed alpha
Helix 127
AO1
I
137 151Right-handed alpha
Helix 128
AO2
I
153 171Right-handed alpha
Helix 129
AO3
I
182 196Right-handed alpha
Helix 130
AO4
I
198 213Right-handed alpha
Helix 131
AO5
I
219 231Right-handed alpha
Helix 132
AO6
I
233 248Right-handed alpha
Helix 133
AO7
I
251 269Right-handed alpha
Helix 134
AO8
I
272 292Right-handed alpha
Helix 135
AO9
I
297 311Right-handed alpha
Helix 136
AP1
I
313 324Right-handed alpha
Helix 137
AP2
I
325 332Right-handed 310
Helix 138
AP3
I
333 351Right-handed alpha
Helix 139
AP4
I
353 368Right-handed alpha
Helix 140
AP5
I
371 385Right-handed alpha
Helix 141
AP6
I
387 400Right-handed alpha
Helix 142
AP7
I
405 426Right-handed alpha
Helix 143
AP8
I
430 455Right-handed alpha
Helix 144
AP9
I
461 475Right-handed alpha
Helix 145
AQ1
I
477 495Right-handed alpha
Helix 146
AQ2
I
500 515Right-handed alpha
Helix 147
AQ3
I
516 530Right-handed alpha
Helix 148
AQ4
I
535 550Right-handed alpha
Helix 149
AQ5
I
554 569Right-handed alpha
Helix 150
AQ6
I
572 586Right-handed alpha
Helix 151
AQ7
I
590 603Right-handed alpha
Helix 152
AQ8
I
608 623Right-handed alpha
Helix 153
AQ9
I
627 642Right-handed alpha
Helix 154
AR1
I
646 666Right-handed alpha
Helix 155
AR2
I
669 694Right-handed alpha
Helix 156
AR3
I
697 711Right-handed alpha
Helix 157
AR4
I
713 726Right-handed alpha
Helix 158
AR5
I
730 744Right-handed alpha
Helix 159
AR6
I
746 760Right-handed alpha
Helix 160
AR7
I
766 784Right-handed alpha
Helix 161
AR8
I
787 809Right-handed alpha
Helix 162
AR9
I
811 835Right-handed alpha
Helix 163
AS1
I
837 841Right-handed 310
Helix 164
AS2
I
842 865Right-handed alpha
Helix 165
AS3
I
875 885Right-handed alpha
Helix 166
AS4
I
886 920Right-handed alpha
Helix 167
AS5
J
32 36Right-handed 310
Helix 168
AS6
J
39 51Right-handed alpha
Helix 169
AS7
J
52 56Right-handed 310
Helix 170
AS8
J
67 71Right-handed 310
Helix 171
AS9
J
79 85Right-handed 310
Helix 172
AT1
J
92 97Right-handed alpha
Helix 173
AT2
J
98 100Right-handed 310
Helix 174
AT3
K
7 15Right-handed alpha
Helix 175
AT4
K
24 29Right-handed 310
Helix 176
AT5
K
37 46Right-handed alpha
Helix 177
AT6
K
46 51Right-handed alpha
Helix 178
AT7
L
26 44Right-handed alpha
Helix 179
AT8
L
45 49Right-handed 310
Helix 180
AT9
L
51 59Right-handed alpha
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There are 6 sheets in PDB entry 7DKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
29 33anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
C
17 18anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 22first strand
Strand 2
E
29 33anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 27first strand
Strand 2
G
17 18anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
18 22first strand
Strand 2
I
29 33anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
26 27first strand
Strand 2
K
17 18anti-parallel
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