Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DKJ entry

There are 9 chains in PDB entry 7DKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 499
C	GLU 1	LYS 173
D	ASP 1	LYS 159
E	ALA 2	GLU 499
G	GLU 1	LYS 173
H	ASP 1	LYS 159
I	ALA 2	GLU 499
K	GLU 1	LYS 173
L	ASP 1	LYS 159

There are 45 helices in PDB entry 7DKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	65	Right-handed alpha
Helix 2	AA2	A	99	108	Right-handed alpha
Helix 3	AA3	A	184	193	Right-handed alpha
Helix 4	AA4	A	364	386	Right-handed alpha
Helix 5	AA5	A	398	400	Right-handed 310
Helix 6	AA6	A	401	453	Right-handed alpha
Helix 7	AA7	A	472	481	Right-handed alpha
Helix 8	AA8	A	485	499	Right-handed alpha
Helix 9	AA9	C	53	57	Right-handed 310
Helix 10	AB1	C	63	67	Right-handed 310
Helix 11	AB2	C	76	78	Right-handed 310
Helix 12	AB3	C	89	93	Right-handed 310
Helix 13	AB4	C	133	170	Right-handed alpha
Helix 14	AB5	D	79	83	Right-handed 310
Helix 15	AB6	D	120	159	Right-handed alpha
Helix 16	AB7	E	58	65	Right-handed alpha
Helix 17	AB8	E	99	108	Right-handed alpha
Helix 18	AB9	E	184	193	Right-handed alpha
Helix 19	AC1	E	364	386	Right-handed alpha
Helix 20	AC2	E	398	400	Right-handed 310
Helix 21	AC3	E	401	453	Right-handed alpha
Helix 22	AC4	E	472	481	Right-handed alpha
Helix 23	AC5	E	485	499	Right-handed alpha
Helix 24	AC6	G	53	57	Right-handed 310
Helix 25	AC7	G	63	67	Right-handed 310
Helix 26	AC8	G	76	78	Right-handed 310
Helix 27	AC9	G	89	93	Right-handed 310
Helix 28	AD1	G	133	170	Right-handed alpha
Helix 29	AD2	H	79	83	Right-handed 310
Helix 30	AD3	H	120	159	Right-handed alpha
Helix 31	AD4	I	58	65	Right-handed alpha
Helix 32	AD5	I	99	108	Right-handed alpha
Helix 33	AD6	I	184	193	Right-handed alpha
Helix 34	AD7	I	364	386	Right-handed alpha
Helix 35	AD8	I	398	400	Right-handed 310
Helix 36	AD9	I	401	453	Right-handed alpha
Helix 37	AE1	I	472	481	Right-handed alpha
Helix 38	AE2	I	485	499	Right-handed alpha
Helix 39	AE3	K	53	57	Right-handed 310
Helix 40	AE4	K	63	67	Right-handed 310
Helix 41	AE5	K	76	78	Right-handed 310
Helix 42	AE6	K	89	93	Right-handed 310
Helix 43	AE7	K	133	170	Right-handed alpha
Helix 44	AE8	L	79	83	Right-handed 310
Helix 45	AE9	L	120	159	Right-handed alpha

There are 45 sheets in PDB entry 7DKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	349	354	anti-parallel
Strand 3	A	359	363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	26	27	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	313	314	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	273	277	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	265	267	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	148	150	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	226	234	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	240	244	anti-parallel
Strand 3	A	199	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	305	306	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	466	467	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	71	75	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	109	112	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	116	118	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	48	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	85	90	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	349	354	anti-parallel
Strand 3	E	359	363	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	26	27	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	313	314	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	273	277	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	265	267	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	117	first strand
Strand 2	E	253	259	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	248	251	anti-parallel
Strand 5	E	148	150	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	117	first strand
Strand 2	E	253	259	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	226	234	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	165	first strand
Strand 2	E	240	244	anti-parallel
Strand 3	E	199	202	anti-parallel
Strand 4	E	207	210	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	293	first strand
Strand 2	E	305	306	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	458	first strand
Strand 2	E	466	467	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	80	85	anti-parallel
Strand 4	G	71	75	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	94	101	anti-parallel
Strand 4	G	109	112	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	94	101	anti-parallel
Strand 4	G	116	118	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	24	first strand
Strand 2	H	70	75	anti-parallel
Strand 3	H	62	67	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	48	49	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	85	90	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	349	354	anti-parallel
Strand 3	I	359	363	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	26	27	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	33	first strand
Strand 2	I	313	314	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	I	273	277	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	83	first strand
Strand 2	I	265	267	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	112	117	first strand
Strand 2	I	253	259	anti-parallel
Strand 3	I	173	181	anti-parallel
Strand 4	I	248	251	anti-parallel
Strand 5	I	148	150	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	112	117	first strand
Strand 2	I	253	259	anti-parallel
Strand 3	I	173	181	anti-parallel
Strand 4	I	226	234	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	165	first strand
Strand 2	I	240	244	anti-parallel
Strand 3	I	199	202	anti-parallel
Strand 4	I	207	210	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	292	293	first strand
Strand 2	I	305	306	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	466	467	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	80	85	anti-parallel
Strand 4	K	71	75	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	46	51	first strand
Strand 2	K	34	39	anti-parallel
Strand 3	K	94	101	anti-parallel
Strand 4	K	109	112	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	46	51	first strand
Strand 2	K	34	39	anti-parallel
Strand 3	K	94	101	anti-parallel
Strand 4	K	116	118	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	48	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKJ