Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKM entry

There are 2 chains in PDB entry 7DKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5GLU 310
B
 ASN 5GLU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7DKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
60 67Right-handed alpha
Helix 4
AA4
A
84 92Right-handed alpha
Helix 5
AA5
A
102 120Right-handed alpha
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
154 166Right-handed alpha
Helix 9
AA9
A
179 185Right-handed alpha
Helix 10
AB1
A
192 197Right-handed alpha
Helix 11
AB2
A
198 200Right-handed 310
Helix 12
AB3
A
210 214Right-handed 310
Helix 13
AB4
A
218 225Right-handed alpha
Helix 14
AB5
A
241 252Right-handed alpha
Helix 15
AB6
A
270 275Right-handed alpha
Helix 16
AB7
A
288 310Right-handed alpha
Helix 17
AB8
B
17 26Right-handed alpha
Helix 18
AB9
B
37 46Right-handed alpha
Helix 19
AC1
B
60 67Right-handed alpha
Helix 20
AC2
B
84 92Right-handed alpha
Helix 21
AC3
B
102 120Right-handed alpha
Helix 22
AC4
B
120 130Right-handed alpha
Helix 23
AC5
B
154 166Right-handed alpha
Helix 24
AC6
B
179 185Right-handed alpha
Helix 25
AC7
B
192 197Right-handed alpha
Helix 26
AC8
B
198 200Right-handed 310
Helix 27
AC9
B
210 214Right-handed 310
Helix 28
AD1
B
218 225Right-handed alpha
Helix 29
AD2
B
241 252Right-handed alpha
Helix 30
AD3
B
270 275Right-handed alpha
Helix 31
AD4
B
288 310Right-handed alpha
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There are 4 sheets in PDB entry 7DKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
8 11parallel
Strand 3
A
50 53parallel
Strand 4
A
72 75parallel
Strand 5
A
94 96parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
170 174parallel
Strand 3
A
147 151parallel
Strand 4
A
202 205parallel
Strand 5
A
230 233parallel
Strand 6
A
256 259parallel
Strand 7
A
278 280parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
8 11parallel
Strand 3
B
50 53parallel
Strand 4
B
72 75parallel
Strand 5
B
94 96parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
170 174parallel
Strand 3
B
147 151parallel
Strand 4
B
202 205parallel
Strand 5
B
229 233parallel
Strand 6
B
254 259parallel
Strand 7
B
278 280parallel
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