Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DKP entry

There are 4 chains in PDB entry 7DKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 215
B
 MET 1ILE 215
C
 MET 1ILE 215
D
 MET 1ILE 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7DKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
61 72Right-handed alpha
Helix 4
AA4
A
83 95Right-handed alpha
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
115 131Right-handed alpha
Helix 8
AA8
A
132 139Right-handed alpha
Helix 9
AA9
A
139 156Right-handed alpha
Helix 10
AB1
A
169 183Right-handed alpha
Helix 11
AB2
A
191 206Right-handed alpha
Helix 12
AB3
A
210 214Right-handed 310
Helix 13
AB4
B
9 23Right-handed alpha
Helix 14
AB5
B
36 44Right-handed alpha
Helix 15
AB6
B
61 72Right-handed alpha
Helix 16
AB7
B
83 95Right-handed alpha
Helix 17
AB8
B
97 108Right-handed alpha
Helix 18
AB9
B
110 114Right-handed 310
Helix 19
AC1
B
115 131Right-handed alpha
Helix 20
AC2
B
132 139Right-handed alpha
Helix 21
AC3
B
139 158Right-handed alpha
Helix 22
AC4
B
169 183Right-handed alpha
Helix 23
AC5
B
191 206Right-handed alpha
Helix 24
AC6
B
210 214Right-handed 310
Helix 25
AC7
C
9 23Right-handed alpha
Helix 26
AC8
C
36 44Right-handed alpha
Helix 27
AC9
C
61 72Right-handed alpha
Helix 28
AD1
C
83 95Right-handed alpha
Helix 29
AD2
C
97 108Right-handed alpha
Helix 30
AD3
C
110 114Right-handed 310
Helix 31
AD4
C
115 131Right-handed alpha
Helix 32
AD5
C
132 139Right-handed alpha
Helix 33
AD6
C
139 156Right-handed alpha
Helix 34
AD7
C
169 183Right-handed alpha
Helix 35
AD8
C
191 206Right-handed alpha
Helix 36
AD9
C
210 214Right-handed 310
Helix 37
AE1
D
9 23Right-handed alpha
Helix 38
AE2
D
36 44Right-handed alpha
Helix 39
AE3
D
61 72Right-handed alpha
Helix 40
AE4
D
83 95Right-handed alpha
Helix 41
AE5
D
97 108Right-handed alpha
Helix 42
AE6
D
110 114Right-handed 310
Helix 43
AE7
D
115 131Right-handed alpha
Helix 44
AE8
D
132 139Right-handed alpha
Helix 45
AE9
D
139 156Right-handed alpha
Helix 46
AF1
D
169 183Right-handed alpha
Helix 47
AF2
D
191 206Right-handed alpha
Helix 48
AF3
D
210 214Right-handed 310
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There are 4 sheets in PDB entry 7DKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
50 52anti-parallel
Strand 4
A
58 60anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
2 5parallel
Strand 3
B
50 52anti-parallel
Strand 4
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
2 5parallel
Strand 3
C
50 52anti-parallel
Strand 4
C
58 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
2 5parallel
Strand 3
D
50 52anti-parallel
Strand 4
D
58 60anti-parallel
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