Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DKZ entry

There are 5 chains in PDB entry 7DKZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ALA 35	ALA 229
2	PRO 52	ALA 255
3	PRO 50	SER 265
4	LYS 53	GLN 247
A	GLU 17	THR 480

There are143 helices in PDB entry 7DKZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	61	64	Right-handed 310
Helix 2	AA2	1	65	96	Right-handed alpha
Helix 3	AA3	1	102	106	Right-handed 310
Helix 4	AA4	1	126	147	Right-handed alpha
Helix 5	AA5	1	150	156	Right-handed alpha
Helix 6	AA6	1	158	162	Right-handed 310
Helix 7	AA7	1	169	201	Right-handed alpha
Helix 8	AA8	1	205	216	Right-handed alpha
Helix 9	AA9	1	222	227	Right-handed alpha
Helix 10	AB1	2	85	118	Right-handed alpha
Helix 11	AB2	2	138	163	Right-handed alpha
Helix 12	AB3	2	187	192	Right-handed alpha
Helix 13	AB4	2	200	232	Right-handed alpha
Helix 14	AB5	2	235	246	Right-handed alpha
Helix 15	AB6	3	88	110	Right-handed alpha
Helix 16	AB7	3	111	120	Right-handed alpha
Helix 17	AB8	3	129	133	Right-handed 310
Helix 18	AB9	3	147	172	Right-handed alpha
Helix 19	AC1	3	183	188	Right-handed 310
Helix 20	AC2	3	198	203	Right-handed alpha
Helix 21	AC3	3	210	243	Right-handed alpha
Helix 22	AC4	3	245	256	Right-handed alpha
Helix 23	AC5	4	84	118	Right-handed alpha
Helix 24	AC6	4	137	162	Right-handed alpha
Helix 25	AC7	4	186	190	Right-handed 310
Helix 26	AC8	4	197	226	Right-handed alpha
Helix 27	AC9	4	228	239	Right-handed alpha
Helix 28	AD1	A	41	46	Right-handed alpha
Helix 29	AD2	A	51	60	Right-handed alpha
Helix 30	AD3	A	63	68	Right-handed alpha
Helix 31	AD4	A	70	103	Right-handed alpha
Helix 32	AD5	A	105	112	Right-handed alpha
Helix 33	AD6	A	128	133	Right-handed 310
Helix 34	AD7	A	148	156	Right-handed alpha
Helix 35	AD8	A	160	188	Right-handed alpha
Helix 36	AD9	A	192	198	Right-handed alpha
Helix 37	AE1	A	198	208	Right-handed alpha
Helix 38	AE2	A	209	225	Right-handed alpha
Helix 39	AE3	A	225	236	Right-handed alpha
Helix 40	AE4	A	238	242	Right-handed 310
Helix 41	AE5	A	246	251	Right-handed alpha
Helix 42	AE6	A	251	259	Right-handed alpha
Helix 43	AE7	A	260	265	Right-handed 310
Helix 44	AE8	A	266	271	Right-handed alpha
Helix 45	AE9	A	273	278	Right-handed 310
Helix 46	AF1	A	295	314	Right-handed alpha
Helix 47	AF2	A	326	333	Right-handed alpha
Helix 48	AF3	A	345	350	Right-handed alpha
Helix 49	AF4	A	353	379	Right-handed alpha
Helix 50	AF5	A	388	421	Right-handed alpha
Helix 51	AF6	A	429	437	Right-handed alpha
Helix 52	AF7	A	438	456	Right-handed alpha
Helix 53	AF8	A	457	470	Right-handed alpha
Helix 54	AF9	A	472	476	Right-handed 310
Helix 55	AG1	A	486	498	Right-handed alpha
Helix 56	AG2	A	535	562	Right-handed alpha
Helix 57	AG3	A	571	576	Right-handed 310
Helix 58	AG4	A	593	624	Right-handed alpha
Helix 59	AG5	A	641	646	Right-handed alpha
Helix 60	AG6	A	648	656	Right-handed alpha
Helix 61	AG7	A	656	661	Right-handed alpha
Helix 62	AG8	A	661	666	Right-handed alpha
Helix 63	AG9	A	672	695	Right-handed alpha
Helix 64	AH1	A	696	714	Right-handed alpha
Helix 65	AH2	A	726	758	Right-handed alpha
Helix 66	AH3	B	9	14	Right-handed alpha
Helix 67	AH4	B	18	28	Right-handed alpha
Helix 68	AH5	B	30	34	Right-handed 310
Helix 69	AH6	B	38	72	Right-handed alpha
Helix 70	AH7	B	73	80	Right-handed alpha
Helix 71	AH8	B	97	104	Right-handed alpha
Helix 72	AH9	B	119	127	Right-handed alpha
Helix 73	AI1	B	131	156	Right-handed alpha
Helix 74	AI2	B	157	162	Right-handed 310
Helix 75	AI3	B	164	169	Right-handed alpha
Helix 76	AI4	B	170	181	Right-handed alpha
Helix 77	AI5	B	183	197	Right-handed alpha
Helix 78	AI6	B	197	203	Right-handed alpha
Helix 79	AI7	B	222	228	Right-handed alpha
Helix 80	AI8	B	229	235	Right-handed 310
Helix 81	AI9	B	269	288	Right-handed alpha
Helix 82	AJ1	B	300	308	Right-handed alpha
Helix 83	AJ2	B	321	328	Right-handed alpha
Helix 84	AJ3	B	329	355	Right-handed alpha
Helix 85	AJ4	B	364	397	Right-handed alpha
Helix 86	AJ5	B	406	414	Right-handed alpha
Helix 87	AJ6	B	414	446	Right-handed alpha
Helix 88	AJ7	B	448	452	Right-handed 310
Helix 89	AJ8	B	457	467	Right-handed alpha
Helix 90	AJ9	B	476	480	Right-handed 310
Helix 91	AK1	B	483	490	Right-handed alpha
Helix 92	AK2	B	493	502	Right-handed alpha
Helix 93	AK3	B	513	540	Right-handed alpha
Helix 94	AK4	B	549	554	Right-handed 310
Helix 95	AK5	B	562	566	Right-handed 310
Helix 96	AK6	B	571	603	Right-handed alpha
Helix 97	AK7	B	606	613	Right-handed alpha
Helix 98	AK8	B	615	623	Right-handed alpha
Helix 99	AK9	B	623	628	Right-handed alpha
Helix 100	AL1	B	629	633	Right-handed 310
Helix 101	AL2	B	643	666	Right-handed alpha
Helix 102	AL3	B	667	684	Right-handed alpha
Helix 103	AL4	B	701	733	Right-handed alpha
Helix 104	AL5	C	15	21	Right-handed alpha
Helix 105	AL6	C	44	48	Right-handed 310
Helix 106	AL7	C	52	58	Right-handed alpha
Helix 107	AL8	D	91	97	Right-handed alpha
Helix 108	AL9	D	133	147	Right-handed alpha
Helix 109	AM1	D	190	194	Right-handed 310
Helix 110	AM2	D	196	201	Right-handed 310
Helix 111	AM3	E	56	58	Right-handed 310
Helix 112	AM4	F	77	81	Right-handed 310
Helix 113	AM5	F	87	106	Right-handed alpha
Helix 114	AM6	F	112	135	Right-handed alpha
Helix 115	AM7	F	152	158	Right-handed 310
Helix 116	AM8	F	159	186	Right-handed alpha
Helix 117	AM9	F	191	196	Right-handed alpha
Helix 118	AN1	F	198	206	Right-handed alpha
Helix 119	AN2	F	207	210	Right-handed 310
Helix 120	AN3	F	211	222	Right-handed alpha
Helix 121	AN4	G	3	22	Right-handed alpha
Helix 122	AN5	G	23	34	Right-handed alpha
Helix 123	AN6	G	49	53	Right-handed 310
Helix 124	AN7	G	55	60	Right-handed alpha
Helix 125	AN8	G	68	92	Right-handed alpha
Helix 126	AN9	H	62	67	Right-handed alpha
Helix 127	AO1	H	82	93	Right-handed alpha
Helix 128	AO2	H	94	97	Right-handed 310
Helix 129	AO3	H	98	120	Right-handed alpha
Helix 130	AO4	H	126	131	Right-handed alpha
Helix 131	AO5	I	4	14	Right-handed alpha
Helix 132	AO6	I	14	30	Right-handed alpha
Helix 133	AO7	J	2	9	Right-handed alpha
Helix 134	AO8	J	10	33	Right-handed alpha
Helix 135	AO9	L	11	13	Right-handed 310
Helix 136	AP1	L	26	36	Right-handed alpha
Helix 137	AP2	L	37	40	Right-handed 310
Helix 138	AP3	L	44	68	Right-handed alpha
Helix 139	AP4	L	75	103	Right-handed alpha
Helix 140	AP5	L	124	127	Right-handed 310
Helix 141	AP6	L	128	156	Right-handed alpha
Helix 142	AP7	K	50	68	Right-handed alpha
Helix 143	AP8	K	99	123	Right-handed alpha

There are 17 sheets in PDB entry 7DKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	116	117	first strand
Strand 2	1	120	121	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	189	191	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	134	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	526	529	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	627	first strand
Strand 2	A	635	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	267	268	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	186	187	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	131	first strand
Strand 2	D	99	106	anti-parallel
Strand 3	D	152	157	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	119	122	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	55	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	22	28	anti-parallel
Strand 4	E	8	11	anti-parallel
Strand 5	E	60	62	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	83	first strand
Strand 2	F	138	139	anti-parallel
Strand 3	F	145	146	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	42	43	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	9	first strand
Strand 2	L	19	20	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	77	first strand
Strand 2	K	84	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DKZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DKZ