Analysis of interatomic Contacts of Structural Units in PDB entry:
7DLU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DLU entry

There are 7 chains in PDB entry 7DLU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 14	GLN 273
B	SER 14	GLN 273
C	SER 14	GLN 273
D	SER 14	GLN 273
E	SER 14	GLN 273
F	SER 14	GLN 273
G	SER 14	GLN 273

There are 56 helices in PDB entry 7DLU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	54	Right-handed alpha
Helix 2	AA2	A	58	85	Right-handed alpha
Helix 3	AA3	A	88	105	Right-handed alpha
Helix 4	AA4	A	106	122	Right-handed alpha
Helix 5	AA5	A	162	167	Right-handed alpha
Helix 6	AA6	A	192	202	Right-handed alpha
Helix 7	AA7	A	239	256	Right-handed alpha
Helix 8	AA8	A	257	259	Right-handed 310
Helix 9	AA9	B	15	54	Right-handed alpha
Helix 10	AB1	B	58	85	Right-handed alpha
Helix 11	AB2	B	88	105	Right-handed alpha
Helix 12	AB3	B	106	122	Right-handed alpha
Helix 13	AB4	B	162	167	Right-handed alpha
Helix 14	AB5	B	192	202	Right-handed alpha
Helix 15	AB6	B	239	256	Right-handed alpha
Helix 16	AB7	B	257	259	Right-handed 310
Helix 17	AB8	C	15	54	Right-handed alpha
Helix 18	AB9	C	58	85	Right-handed alpha
Helix 19	AC1	C	88	105	Right-handed alpha
Helix 20	AC2	C	106	122	Right-handed alpha
Helix 21	AC3	C	162	167	Right-handed alpha
Helix 22	AC4	C	192	202	Right-handed alpha
Helix 23	AC5	C	239	256	Right-handed alpha
Helix 24	AC6	C	257	259	Right-handed 310
Helix 25	AC7	D	15	54	Right-handed alpha
Helix 26	AC8	D	58	85	Right-handed alpha
Helix 27	AC9	D	88	105	Right-handed alpha
Helix 28	AD1	D	106	122	Right-handed alpha
Helix 29	AD2	D	162	167	Right-handed alpha
Helix 30	AD3	D	192	202	Right-handed alpha
Helix 31	AD4	D	239	256	Right-handed alpha
Helix 32	AD5	D	257	259	Right-handed 310
Helix 33	AD6	E	15	54	Right-handed alpha
Helix 34	AD7	E	58	85	Right-handed alpha
Helix 35	AD8	E	88	105	Right-handed alpha
Helix 36	AD9	E	106	122	Right-handed alpha
Helix 37	AE1	E	162	167	Right-handed alpha
Helix 38	AE2	E	192	202	Right-handed alpha
Helix 39	AE3	E	239	256	Right-handed alpha
Helix 40	AE4	E	257	259	Right-handed 310
Helix 41	AE5	F	15	54	Right-handed alpha
Helix 42	AE6	F	58	85	Right-handed alpha
Helix 43	AE7	F	88	105	Right-handed alpha
Helix 44	AE8	F	106	122	Right-handed alpha
Helix 45	AE9	F	162	167	Right-handed alpha
Helix 46	AF1	F	192	202	Right-handed alpha
Helix 47	AF2	F	239	256	Right-handed alpha
Helix 48	AF3	F	257	259	Right-handed 310
Helix 49	AF4	G	15	54	Right-handed alpha
Helix 50	AF5	G	58	85	Right-handed alpha
Helix 51	AF6	G	88	105	Right-handed alpha
Helix 52	AF7	G	106	122	Right-handed alpha
Helix 53	AF8	G	162	167	Right-handed alpha
Helix 54	AF9	G	192	202	Right-handed alpha
Helix 55	AG1	G	239	256	Right-handed alpha
Helix 56	AG2	G	257	259	Right-handed 310

There are 16 sheets in PDB entry 7DLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	136	143	anti-parallel
Strand 3	A	147	151	anti-parallel
Strand 4	A	157	161	anti-parallel
Strand 5	B	170	172	anti-parallel
Strand 6	B	130	133	anti-parallel
Strand 7	B	136	143	anti-parallel
Strand 8	B	147	151	anti-parallel
Strand 9	B	157	161	anti-parallel
Strand 10	C	170	172	anti-parallel
Strand 11	C	130	133	anti-parallel
Strand 12	C	136	143	anti-parallel
Strand 13	C	147	151	anti-parallel
Strand 14	C	157	161	anti-parallel
Strand 15	D	170	172	anti-parallel
Strand 16	D	130	133	anti-parallel
Strand 17	D	136	143	anti-parallel
Strand 18	D	147	151	anti-parallel
Strand 19	D	157	161	anti-parallel
Strand 20	E	170	172	anti-parallel
Strand 21	E	130	133	anti-parallel
Strand 22	E	136	143	anti-parallel
Strand 23	E	147	151	anti-parallel
Strand 24	E	157	161	anti-parallel
Strand 25	F	170	172	anti-parallel
Strand 26	F	130	133	anti-parallel
Strand 27	F	136	143	anti-parallel
Strand 28	F	147	151	anti-parallel
Strand 29	F	157	161	anti-parallel
Strand 30	G	170	172	anti-parallel
Strand 31	G	130	133	anti-parallel
Strand 32	G	136	143	anti-parallel
Strand 33	G	147	151	anti-parallel
Strand 34	G	157	161	anti-parallel
Strand 35	A	170	172	anti-parallel
Strand 36	A	130	133	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	227	236	anti-parallel
Strand 3	A	185	187	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	227	236	anti-parallel
Strand 3	A	216	222	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	B	266	272	parallel
Strand 3	C	266	272	parallel
Strand 4	D	266	272	parallel
Strand 5	E	266	272	parallel
Strand 6	F	266	272	parallel
Strand 7	G	266	272	parallel
Strand 8	A	266	272	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	227	236	anti-parallel
Strand 3	B	185	187	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	227	236	anti-parallel
Strand 3	B	216	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	227	236	anti-parallel
Strand 3	C	185	187	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	227	236	anti-parallel
Strand 3	C	216	222	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	227	236	anti-parallel
Strand 3	D	185	187	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	227	236	anti-parallel
Strand 3	D	216	222	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	227	236	anti-parallel
Strand 3	E	185	187	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	227	236	anti-parallel
Strand 3	E	216	222	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	227	236	anti-parallel
Strand 3	F	185	187	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	227	236	anti-parallel
Strand 3	F	216	222	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	181	first strand
Strand 2	G	227	236	anti-parallel
Strand 3	G	185	187	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	181	first strand
Strand 2	G	227	236	anti-parallel
Strand 3	G	216	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DLU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DLU