Analysis of interatomic Contacts of Structural Units in PDB entry:
7DM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DM1 entry

There are 6 chains in PDB entry 7DM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 18	SER 351
A	THR 18	SER 351
C	SER 5	PRO 216
D	GLU 1	PRO 228
E	SER 5	PRO 216
F	GLU 1	ARG 38

There are 48 helices in PDB entry 7DM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	38	53	Right-handed alpha
Helix 2	AA2	B	64	75	Right-handed alpha
Helix 3	AA3	B	87	94	Right-handed alpha
Helix 4	AA4	B	123	132	Right-handed alpha
Helix 5	AA5	B	140	145	Right-handed alpha
Helix 6	AA6	B	166	180	Right-handed alpha
Helix 7	AA7	B	206	218	Right-handed alpha
Helix 8	AA8	B	229	236	Right-handed alpha
Helix 9	AA9	B	254	266	Right-handed alpha
Helix 10	AB1	B	302	318	Right-handed alpha
Helix 11	AB2	B	319	321	Right-handed 310
Helix 12	AB3	B	322	327	Right-handed alpha
Helix 13	AB4	B	335	347	Right-handed alpha
Helix 14	AB5	A	38	53	Right-handed alpha
Helix 15	AB6	A	64	74	Right-handed alpha
Helix 16	AB7	A	87	94	Right-handed alpha
Helix 17	AB8	A	123	132	Right-handed alpha
Helix 18	AB9	A	140	147	Right-handed alpha
Helix 19	AC1	A	166	180	Right-handed alpha
Helix 20	AC2	A	206	218	Right-handed alpha
Helix 21	AC3	A	229	236	Right-handed alpha
Helix 22	AC4	A	254	269	Right-handed alpha
Helix 23	AC5	A	302	318	Right-handed alpha
Helix 24	AC6	A	319	321	Right-handed 310
Helix 25	AC7	A	322	327	Right-handed alpha
Helix 26	AC8	A	335	347	Right-handed alpha
Helix 27	AC9	C	84	88	Right-handed 310
Helix 28	AD1	C	129	135	Right-handed alpha
Helix 29	AD2	C	189	195	Right-handed alpha
Helix 30	AD3	D	28	32	Right-handed 310
Helix 31	AD4	D	53	57	Right-handed 310
Helix 32	AD5	D	76	78	Right-handed 310
Helix 33	AD6	D	89	93	Right-handed 310
Helix 34	AD7	D	171	173	Right-handed 310
Helix 35	AD8	D	202	204	Right-handed 310
Helix 36	AD9	D	216	219	Right-handed 310
Helix 37	AE1	E	84	88	Right-handed 310
Helix 38	AE2	E	97	102	Right-handed alpha
Helix 39	AE3	E	129	135	Right-handed alpha
Helix 40	AE4	E	189	195	Right-handed alpha
Helix 41	AE5	F	28	32	Right-handed 310
Helix 42	AE6	F	53	57	Right-handed 310
Helix 43	AE7	F	64	67	Right-handed 310
Helix 44	AE8	F	76	78	Right-handed 310
Helix 45	AE9	F	89	93	Right-handed 310
Helix 46	AF1	F	171	173	Right-handed 310
Helix 47	AF2	F	202	206	Right-handed 310
Helix 48	AF3	F	216	219	Right-handed 310

There are 30 sheets in PDB entry 7DM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	28	34	parallel
Strand 3	B	79	82	parallel
Strand 4	B	289	297	anti-parallel
Strand 5	B	97	111	anti-parallel
Strand 6	B	221	226	anti-parallel
Strand 7	B	158	162	parallel
Strand 8	B	203	205	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	28	34	parallel
Strand 3	B	79	82	parallel
Strand 4	B	289	297	anti-parallel
Strand 5	B	97	111	anti-parallel
Strand 6	B	239	240	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	242	244	parallel
Strand 3	B	250	251	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	28	34	parallel
Strand 3	A	79	82	parallel
Strand 4	A	289	297	anti-parallel
Strand 5	A	97	111	anti-parallel
Strand 6	A	221	226	anti-parallel
Strand 7	A	158	162	parallel
Strand 8	A	203	205	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	28	34	parallel
Strand 3	A	79	82	parallel
Strand 4	A	289	297	anti-parallel
Strand 5	A	97	111	anti-parallel
Strand 6	A	239	240	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	242	244	parallel
Strand 3	A	250	251	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	109	113	parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	38	43	anti-parallel
Strand 5	C	50	53	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	109	113	parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	103	105	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	67	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	180	188	anti-parallel
Strand 4	C	167	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	180	188	anti-parallel
Strand 4	C	173	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	199	205	anti-parallel
Strand 4	C	208	214	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	117	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	210	215	anti-parallel
Strand 3	D	220	225	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	109	113	parallel
Strand 3	E	90	96	anti-parallel
Strand 4	E	38	43	anti-parallel
Strand 5	E	50	53	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	109	113	parallel
Strand 3	E	90	96	anti-parallel
Strand 4	E	103	105	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	75	80	anti-parallel
Strand 3	E	67	72	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	180	188	anti-parallel
Strand 4	E	167	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	180	188	anti-parallel
Strand 4	E	173	174	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	153	158	anti-parallel
Strand 3	E	199	205	anti-parallel
Strand 4	E	208	214	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	117	118	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	150	160	anti-parallel
Strand 3	F	191	200	anti-parallel
Strand 4	F	178	180	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	150	160	anti-parallel
Strand 3	F	191	200	anti-parallel
Strand 4	F	184	185	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	169	first strand
Strand 2	F	210	215	anti-parallel
Strand 3	F	220	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DM1