Analysis of interatomic Contacts of Structural Units in PDB entry:
7DM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DM2 entry

There are 3 chains in PDB entry 7DM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18SER 351
L
 SER 5THR 216
H
 GLU 1PRO 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7DM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 53Right-handed alpha
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
87 94Right-handed alpha
Helix 4
AA4
A
123 132Right-handed alpha
Helix 5
AA5
A
140 147Right-handed alpha
Helix 6
AA6
A
166 180Right-handed alpha
Helix 7
AA7
A
206 218Right-handed alpha
Helix 8
AA8
A
229 236Right-handed alpha
Helix 9
AA9
A
254 265Right-handed alpha
Helix 10
AB1
A
302 317Right-handed alpha
Helix 11
AB2
A
318 321Right-handed 310
Helix 12
AB3
A
322 327Right-handed alpha
Helix 13
AB4
A
335 348Right-handed alpha
Helix 14
AB5
L
31 35Right-handed 310
Helix 15
AB6
L
83 87Right-handed 310
Helix 16
AB7
L
128 134Right-handed alpha
Helix 17
AB8
L
188 194Right-handed alpha
Helix 18
AB9
H
28 30Right-handed 310
Helix 19
AC1
H
74 76Right-handed 310
Helix 20
AC2
H
87 91Right-handed 310
Helix 21
AC3
H
168 170Right-handed 310
Helix 22
AC4
H
213 216Right-handed 310
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There are 15 sheets in PDB entry 7DM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
28 34parallel
Strand 3
A
79 82parallel
Strand 4
A
289 297anti-parallel
Strand 5
A
97 111anti-parallel
Strand 6
A
221 226anti-parallel
Strand 7
A
158 162parallel
Strand 8
A
203 205parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
28 34parallel
Strand 3
A
79 82parallel
Strand 4
A
289 297anti-parallel
Strand 5
A
97 111anti-parallel
Strand 6
A
239 240anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
242 244parallel
Strand 3
A
250 251anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 15first strand
Strand 2
L
108 112parallel
Strand 3
L
88 96anti-parallel
Strand 4
L
37 42anti-parallel
Strand 5
L
49 52anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 15first strand
Strand 2
L
108 112parallel
Strand 3
L
88 96anti-parallel
Strand 4
L
101 104anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
21 26first strand
Strand 2
L
74 79anti-parallel
Strand 3
L
66 71anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
121 125first strand
Strand 2
L
137 146anti-parallel
Strand 3
L
179 187anti-parallel
Strand 4
L
166 168anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
121 125first strand
Strand 2
L
137 146anti-parallel
Strand 3
L
179 187anti-parallel
Strand 4
L
172 173anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
160 162first strand
Strand 2
L
152 157anti-parallel
Strand 3
L
198 204anti-parallel
Strand 4
L
207 213anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
59 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
114 115anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 136first strand
Strand 2
H
148 157anti-parallel
Strand 3
H
188 196anti-parallel
Strand 4
H
175 177anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 136first strand
Strand 2
H
148 157anti-parallel
Strand 3
H
188 196anti-parallel
Strand 4
H
181 182anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
163 166first strand
Strand 2
H
207 212anti-parallel
Strand 3
H
217 222anti-parallel
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