Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DMA entry

There are 2 chains in PDB entry 7DMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 46ALA 138
B
 GLU 141ALA 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7DMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 73Right-handed alpha
Helix 2
AA2
A
88 94Right-handed alpha
Helix 3
AA3
A
119 132Right-handed alpha
Helix 4
AA4
B
146 169Right-handed alpha
Helix 5
AA5
B
184 188Right-handed 310
Helix 6
AA6
B
219 223Right-handed alpha
Helix 7
AA7
B
225 231Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7DMA.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 87first strand
Strand 2
B
196 206anti-parallel
Strand 3
B
209 218anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
99 107anti-parallel
Strand 6
B
175 182anti-parallel
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