Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DMB entry

There are 2 chains in PDB entry 7DMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6ALA 363
B
 LEU 6ALA 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7DMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
35 60Right-handed alpha
Helix 4
AA4
A
64 82Right-handed alpha
Helix 5
AA5
A
91 98Right-handed alpha
Helix 6
AA6
A
99 115Right-handed alpha
Helix 7
AA7
A
119 138Right-handed alpha
Helix 8
AA8
A
142 149Right-handed alpha
Helix 9
AA9
A
151 162Right-handed alpha
Helix 10
AB1
A
166 177Right-handed alpha
Helix 11
AB2
A
190 201Right-handed alpha
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
221 229Right-handed alpha
Helix 14
AB5
A
264 268Right-handed 310
Helix 15
AB6
A
270 281Right-handed alpha
Helix 16
AB7
A
298 305Right-handed alpha
Helix 17
AB8
A
307 312Right-handed 310
Helix 18
AB9
A
313 317Right-handed 310
Helix 19
AC1
A
325 336Right-handed alpha
Helix 20
AC2
B
26 28Right-handed 310
Helix 21
AC3
B
35 60Right-handed alpha
Helix 22
AC4
B
64 82Right-handed alpha
Helix 23
AC5
B
91 98Right-handed alpha
Helix 24
AC6
B
99 115Right-handed alpha
Helix 25
AC7
B
119 138Right-handed alpha
Helix 26
AC8
B
142 149Right-handed alpha
Helix 27
AC9
B
151 163Right-handed alpha
Helix 28
AD1
B
166 177Right-handed alpha
Helix 29
AD2
B
190 201Right-handed alpha
Helix 30
AD3
B
218 220Right-handed 310
Helix 31
AD4
B
221 229Right-handed alpha
Helix 32
AD5
B
264 268Right-handed 310
Helix 33
AD6
B
270 281Right-handed alpha
Helix 34
AD7
B
298 305Right-handed alpha
Helix 35
AD8
B
307 312Right-handed 310
Helix 36
AD9
B
313 317Right-handed 310
Helix 37
AE1
B
325 335Right-handed alpha
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There are 6 sheets in PDB entry 7DMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
164 165anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 239first strand
Strand 2
A
209 216parallel
Strand 3
A
180 185parallel
Strand 4
A
256 262parallel
Strand 5
A
282 293parallel
Strand 6
A
355 362anti-parallel
Strand 7
A
338 346anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
23 24anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
164 165anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 239first strand
Strand 2
B
209 216parallel
Strand 3
B
180 185parallel
Strand 4
B
256 262parallel
Strand 5
B
282 293parallel
Strand 6
B
355 361anti-parallel
Strand 7
B
343 346anti-parallel
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