Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DMK entry

There are 2 chains in PDB entry 7DMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	GLN 747
B	ARG 13	ARG 571

There are 30 helices in PDB entry 7DMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	19	27	Right-handed alpha
Helix 3	AA3	A	164	168	Right-handed 310
Helix 4	AA4	A	197	201	Right-handed 310
Helix 5	AA5	A	291	295	Right-handed 310
Helix 6	AA6	A	402	407	Right-handed alpha
Helix 7	AA7	A	437	445	Right-handed alpha
Helix 8	AA8	A	720	723	Right-handed 310
Helix 9	AA9	B	16	18	Right-handed 310
Helix 10	AB1	B	19	27	Right-handed alpha
Helix 11	AB2	B	164	168	Right-handed 310
Helix 12	AB3	B	197	201	Right-handed 310
Helix 13	AB4	B	291	295	Right-handed 310
Helix 14	AB5	B	402	407	Right-handed alpha
Helix 15	AB6	B	437	446	Right-handed alpha
Helix 16	AB7	B	720	723	Right-handed 310
Helix 17	AB8	C	16	18	Right-handed 310
Helix 18	AB9	C	19	26	Right-handed alpha
Helix 19	AC1	C	164	168	Right-handed 310
Helix 20	AC2	C	197	201	Right-handed 310
Helix 21	AC3	C	291	295	Right-handed 310
Helix 22	AC4	C	402	407	Right-handed alpha
Helix 23	AC5	C	437	446	Right-handed alpha
Helix 24	AC6	D	16	18	Right-handed 310
Helix 25	AC7	D	19	26	Right-handed alpha
Helix 26	AC8	D	164	168	Right-handed 310
Helix 27	AC9	D	291	295	Right-handed 310
Helix 28	AD1	D	402	407	Right-handed alpha
Helix 29	AD2	D	437	446	Right-handed alpha
Helix 30	AD3	D	720	723	Right-handed 310

There are 32 sheets in PDB entry 7DMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	32	35	parallel
Strand 3	A	57	61	parallel
Strand 4	A	82	85	parallel
Strand 5	A	113	115	parallel
Strand 6	A	142	144	parallel
Strand 7	A	173	175	parallel
Strand 8	A	208	210	parallel
Strand 9	A	232	234	parallel
Strand 10	A	254	256	parallel
Strand 11	A	279	281	parallel
Strand 12	A	315	320	parallel
Strand 13	A	345	350	parallel
Strand 14	A	372	375	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	67	72	parallel
Strand 3	A	87	93	parallel
Strand 4	A	118	120	parallel
Strand 5	A	147	149	parallel
Strand 6	A	178	179	parallel
Strand 7	A	213	215	parallel
Strand 8	A	237	239	parallel
Strand 9	A	259	261	parallel
Strand 10	A	284	286	parallel
Strand 11	A	323	325	parallel
Strand 12	A	353	355	parallel
Strand 13	A	377	380	parallel
Strand 14	A	390	392	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	74	80	parallel
Strand 3	A	107	110	parallel
Strand 4	A	103	104	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	74	80	parallel
Strand 3	A	100	101	parallel
Strand 4	A	134	136	parallel
Strand 5	A	158	160	parallel
Strand 6	A	193	195	parallel
Strand 7	A	222	227	parallel
Strand 8	A	244	249	parallel
Strand 9	A	271	273	parallel
Strand 10	A	297	300	parallel
Strand 11	A	330	334	parallel
Strand 12	A	364	365	parallel

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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	432	first strand
Strand 2	A	450	454	parallel
Strand 3	A	471	476	parallel
Strand 4	A	504	508	parallel
Strand 5	A	539	542	parallel
Strand 6	A	568	571	parallel
Strand 7	A	599	603	parallel
Strand 8	A	630	634	parallel
Strand 9	A	657	666	parallel
Strand 10	A	637	641	parallel
Strand 11	A	606	610	parallel
Strand 12	A	574	578	parallel
Strand 13	A	545	547	parallel
Strand 14	A	511	513	parallel
Strand 15	A	485	488	parallel
Strand 16	A	459	462	parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	432	first strand
Strand 2	A	450	454	parallel
Strand 3	A	471	476	parallel
Strand 4	A	504	508	parallel
Strand 5	A	539	542	parallel
Strand 6	A	568	571	parallel
Strand 7	A	599	603	parallel
Strand 8	A	630	634	parallel
Strand 9	A	657	666	parallel
Strand 10	A	684	693	parallel
Strand 11	A	708	711	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	497	499	parallel
Strand 3	A	527	529	parallel
Strand 4	A	555	559	parallel
Strand 5	A	581	585	parallel
Strand 6	A	615	618	parallel
Strand 7	A	648	653	parallel
Strand 8	A	673	676	parallel
Strand 9	A	697	699	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	719	first strand
Strand 2	A	724	727	anti-parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	32	35	parallel
Strand 3	B	57	61	parallel
Strand 4	B	82	85	parallel
Strand 5	B	113	115	parallel
Strand 6	B	142	144	parallel
Strand 7	B	173	175	parallel
Strand 8	B	208	210	parallel
Strand 9	B	232	234	parallel
Strand 10	B	254	256	parallel
Strand 11	B	279	281	parallel
Strand 12	B	315	320	parallel
Strand 13	B	345	350	parallel
Strand 14	B	372	375	parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	67	72	parallel
Strand 3	B	87	93	parallel
Strand 4	B	118	120	parallel
Strand 5	B	147	149	parallel
Strand 6	B	178	179	parallel
Strand 7	B	213	215	parallel
Strand 8	B	237	239	parallel
Strand 9	B	259	261	parallel
Strand 10	B	284	286	parallel
Strand 11	B	323	325	parallel
Strand 12	B	353	355	parallel
Strand 13	B	377	380	parallel
Strand 14	B	390	392	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	74	80	parallel
Strand 3	B	107	110	parallel
Strand 4	B	103	104	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	74	80	parallel
Strand 3	B	100	101	parallel
Strand 4	B	134	136	parallel
Strand 5	B	158	160	parallel
Strand 6	B	193	195	parallel
Strand 7	B	222	227	parallel
Strand 8	B	244	249	parallel
Strand 9	B	271	273	parallel
Strand 10	B	297	300	parallel
Strand 11	B	330	334	parallel
Strand 12	B	364	365	parallel

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There are 17 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	450	454	parallel
Strand 3	B	471	476	parallel
Strand 4	B	504	508	parallel
Strand 5	B	539	542	parallel
Strand 6	B	568	571	parallel
Strand 7	B	599	603	parallel
Strand 8	B	630	634	parallel
Strand 9	B	657	666	parallel
Strand 10	B	637	641	parallel
Strand 11	B	606	610	parallel
Strand 12	B	574	578	parallel
Strand 13	B	545	547	parallel
Strand 14	B	511	513	parallel
Strand 15	B	485	488	parallel
Strand 16	B	459	462	parallel
Strand 17	B	435	436	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	450	454	parallel
Strand 3	B	471	476	parallel
Strand 4	B	504	508	parallel
Strand 5	B	539	542	parallel
Strand 6	B	568	571	parallel
Strand 7	B	599	603	parallel
Strand 8	B	630	634	parallel
Strand 9	B	657	666	parallel
Strand 10	B	684	693	parallel
Strand 11	B	710	711	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	497	499	parallel
Strand 3	B	527	529	parallel
Strand 4	B	555	559	parallel
Strand 5	B	581	585	parallel
Strand 6	B	615	618	parallel
Strand 7	B	648	653	parallel
Strand 8	B	673	676	parallel
Strand 9	B	697	699	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	719	first strand
Strand 2	B	724	727	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	32	35	parallel
Strand 3	C	57	61	parallel
Strand 4	C	82	85	parallel
Strand 5	C	113	115	parallel
Strand 6	C	142	144	parallel
Strand 7	C	173	175	parallel
Strand 8	C	208	210	parallel
Strand 9	C	232	234	parallel
Strand 10	C	254	256	parallel
Strand 11	C	279	281	parallel
Strand 12	C	315	320	parallel
Strand 13	C	345	350	parallel
Strand 14	C	372	375	parallel

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There are 14 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	67	72	parallel
Strand 3	C	87	93	parallel
Strand 4	C	118	120	parallel
Strand 5	C	147	149	parallel
Strand 6	C	178	179	parallel
Strand 7	C	213	215	parallel
Strand 8	C	237	239	parallel
Strand 9	C	259	261	parallel
Strand 10	C	284	288	parallel
Strand 11	C	323	327	parallel
Strand 12	C	353	355	parallel
Strand 13	C	377	380	parallel
Strand 14	C	390	392	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	50	first strand
Strand 2	C	74	80	parallel
Strand 3	C	107	110	parallel
Strand 4	C	103	104	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	50	first strand
Strand 2	C	74	80	parallel
Strand 3	C	100	101	parallel
Strand 4	C	134	136	parallel
Strand 5	C	158	160	parallel
Strand 6	C	193	195	parallel
Strand 7	C	222	227	parallel
Strand 8	C	244	249	parallel
Strand 9	C	271	273	parallel
Strand 10	C	297	300	parallel
Strand 11	C	330	334	parallel
Strand 12	C	364	365	parallel

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There are 17 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	450	454	parallel
Strand 3	C	471	476	parallel
Strand 4	C	504	508	parallel
Strand 5	C	538	542	parallel
Strand 6	C	567	571	parallel
Strand 7	C	599	603	parallel
Strand 8	C	630	634	parallel
Strand 9	C	657	666	parallel
Strand 10	C	637	641	parallel
Strand 11	C	606	610	parallel
Strand 12	C	574	578	parallel
Strand 13	C	545	547	parallel
Strand 14	C	511	513	parallel
Strand 15	C	485	488	parallel
Strand 16	C	459	462	parallel
Strand 17	C	435	436	parallel

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There are 11 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	450	454	parallel
Strand 3	C	471	476	parallel
Strand 4	C	504	508	parallel
Strand 5	C	538	542	parallel
Strand 6	C	567	571	parallel
Strand 7	C	599	603	parallel
Strand 8	C	630	634	parallel
Strand 9	C	657	666	parallel
Strand 10	C	684	693	parallel
Strand 11	C	710	711	parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	468	first strand
Strand 2	C	497	499	parallel
Strand 3	C	527	529	parallel
Strand 4	C	555	559	parallel
Strand 5	C	581	585	parallel
Strand 6	C	615	618	parallel
Strand 7	C	648	653	parallel
Strand 8	C	673	676	parallel
Strand 9	C	697	699	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	719	first strand
Strand 2	C	724	727	anti-parallel

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There are 13 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	57	61	parallel
Strand 3	D	82	85	parallel
Strand 4	D	113	115	parallel
Strand 5	D	142	144	parallel
Strand 6	D	173	175	parallel
Strand 7	D	208	210	parallel
Strand 8	D	232	234	parallel
Strand 9	D	254	256	parallel
Strand 10	D	279	281	parallel
Strand 11	D	315	320	parallel
Strand 12	D	345	350	parallel
Strand 13	D	372	375	parallel

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There are 14 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	67	72	parallel
Strand 3	D	87	93	parallel
Strand 4	D	118	120	parallel
Strand 5	D	147	149	parallel
Strand 6	D	178	179	parallel
Strand 7	D	213	215	parallel
Strand 8	D	237	239	parallel
Strand 9	D	259	261	parallel
Strand 10	D	284	286	parallel
Strand 11	D	323	325	parallel
Strand 12	D	353	355	parallel
Strand 13	D	377	380	parallel
Strand 14	D	390	392	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	74	80	parallel
Strand 3	D	107	110	parallel
Strand 4	D	103	104	anti-parallel

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There are 12 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	74	80	parallel
Strand 3	D	100	101	parallel
Strand 4	D	134	136	parallel
Strand 5	D	158	160	parallel
Strand 6	D	193	195	parallel
Strand 7	D	222	227	parallel
Strand 8	D	244	249	parallel
Strand 9	D	271	273	parallel
Strand 10	D	297	300	parallel
Strand 11	D	330	334	parallel
Strand 12	D	364	365	parallel

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There are 17 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	432	first strand
Strand 2	D	450	454	parallel
Strand 3	D	471	476	parallel
Strand 4	D	504	508	parallel
Strand 5	D	539	542	parallel
Strand 6	D	568	571	parallel
Strand 7	D	599	603	parallel
Strand 8	D	630	634	parallel
Strand 9	D	657	666	parallel
Strand 10	D	637	641	parallel
Strand 11	D	606	610	parallel
Strand 12	D	574	578	parallel
Strand 13	D	545	547	parallel
Strand 14	D	511	513	parallel
Strand 15	D	485	488	parallel
Strand 16	D	459	462	parallel
Strand 17	D	435	436	parallel

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There are 11 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	432	first strand
Strand 2	D	450	454	parallel
Strand 3	D	471	476	parallel
Strand 4	D	504	508	parallel
Strand 5	D	539	542	parallel
Strand 6	D	568	571	parallel
Strand 7	D	599	603	parallel
Strand 8	D	630	634	parallel
Strand 9	D	657	666	parallel
Strand 10	D	684	693	parallel
Strand 11	D	708	711	parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	468	first strand
Strand 2	D	497	499	parallel
Strand 3	D	525	529	parallel
Strand 4	D	555	559	parallel
Strand 5	D	581	585	parallel
Strand 6	D	615	617	parallel
Strand 7	D	648	651	parallel
Strand 8	D	673	676	parallel
Strand 9	D	697	699	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	717	719	first strand
Strand 2	D	724	727	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMK