Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DMN entry

There is 1 chain in PDB entry 7DMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3SER 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 7DMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 77Right-handed alpha
Helix 2
AA2
A
218 223Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7DMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
124 130anti-parallel
Strand 5
A
136 143anti-parallel
Strand 6
A
147 155anti-parallel
Strand 7
A
172 190anti-parallel
Strand 8
A
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 100first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
63 71anti-parallel
Strand 4
A
48 57anti-parallel
Strand 5
A
206 215anti-parallel
Strand 6
A
172 190anti-parallel
Strand 7
A
197 201anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
254 261anti-parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
225 233anti-parallel
Strand 5
A
365 375anti-parallel
Strand 6
A
348 359anti-parallel
Strand 7
A
323 338anti-parallel
Strand 8
A
309 315anti-parallel
Strand 9
A
284 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il