Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DMO entry

There are 6 chains in PDB entry 7DMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	PRO 389
B	SER 5	PRO 389
C	SER 5	PRO 389
D	SER 5	PRO 389
E	SER 5	PRO 389
F	GLU 6	PRO 389

There are 29 helices in PDB entry 7DMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	80	Right-handed alpha
Helix 2	AA2	A	161	166	Right-handed alpha
Helix 3	AA3	A	169	173	Right-handed alpha
Helix 4	AA4	A	225	230	Right-handed alpha
Helix 5	AA5	A	253	257	Right-handed 310
Helix 6	AA6	B	74	80	Right-handed alpha
Helix 7	AA7	B	161	166	Right-handed alpha
Helix 8	AA8	B	169	173	Right-handed alpha
Helix 9	AA9	B	225	230	Right-handed alpha
Helix 10	AB1	B	253	257	Right-handed 310
Helix 11	AB2	C	74	79	Right-handed alpha
Helix 12	AB3	C	161	166	Right-handed alpha
Helix 13	AB4	C	225	229	Right-handed 310
Helix 14	AB5	C	253	257	Right-handed 310
Helix 15	AB6	D	74	80	Right-handed alpha
Helix 16	AB7	D	161	166	Right-handed alpha
Helix 17	AB8	D	169	173	Right-handed alpha
Helix 18	AB9	D	225	229	Right-handed 310
Helix 19	AC1	D	253	257	Right-handed 310
Helix 20	AC2	E	76	80	Right-handed 310
Helix 21	AC3	E	161	166	Right-handed alpha
Helix 22	AC4	E	169	173	Right-handed alpha
Helix 23	AC5	E	225	229	Right-handed 310
Helix 24	AC6	E	253	257	Right-handed 310
Helix 25	AC7	F	76	80	Right-handed 310
Helix 26	AC8	F	161	166	Right-handed alpha
Helix 27	AC9	F	169	172	Right-handed 310
Helix 28	AD1	F	225	229	Right-handed 310
Helix 29	AD2	F	253	257	Right-handed 310

There are 22 sheets in PDB entry 7DMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	104	110	anti-parallel
Strand 3	A	115	120	anti-parallel
Strand 4	A	126	131	anti-parallel
Strand 5	A	137	144	anti-parallel
Strand 6	A	148	155	anti-parallel
Strand 7	A	189	196	anti-parallel
Strand 8	A	205	222	anti-parallel
Strand 9	A	50	58	anti-parallel
Strand 10	A	65	73	anti-parallel
Strand 11	A	82	89	anti-parallel
Strand 12	A	95	102	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	104	110	anti-parallel
Strand 3	A	115	120	anti-parallel
Strand 4	A	126	131	anti-parallel
Strand 5	A	137	144	anti-parallel
Strand 6	A	148	155	anti-parallel
Strand 7	A	189	196	anti-parallel
Strand 8	A	205	222	anti-parallel
Strand 9	A	179	182	anti-parallel
Strand 10	A	174	176	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	240	first strand
Strand 2	A	243	251	anti-parallel
Strand 3	A	261	268	anti-parallel
Strand 4	A	271	279	anti-parallel
Strand 5	A	294	301	parallel
Strand 6	A	320	326	anti-parallel
Strand 7	A	333	348	anti-parallel
Strand 8	A	358	370	anti-parallel
Strand 9	A	375	385	anti-parallel
Strand 10	A	232	240	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	14	first strand
Strand 2	B	104	110	anti-parallel
Strand 3	B	115	120	anti-parallel
Strand 4	B	126	131	anti-parallel
Strand 5	B	137	144	anti-parallel
Strand 6	B	148	155	anti-parallel
Strand 7	B	189	196	anti-parallel
Strand 8	B	205	222	anti-parallel
Strand 9	B	50	58	anti-parallel
Strand 10	B	65	73	anti-parallel
Strand 11	B	82	89	anti-parallel
Strand 12	B	95	102	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	14	first strand
Strand 2	B	104	110	anti-parallel
Strand 3	B	115	120	anti-parallel
Strand 4	B	126	131	anti-parallel
Strand 5	B	137	144	anti-parallel
Strand 6	B	148	155	anti-parallel
Strand 7	B	189	196	anti-parallel
Strand 8	B	205	222	anti-parallel
Strand 9	B	179	182	anti-parallel
Strand 10	B	174	176	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	348	first strand
Strand 2	B	358	369	anti-parallel
Strand 3	B	375	385	anti-parallel
Strand 4	B	232	240	anti-parallel
Strand 5	B	243	251	anti-parallel
Strand 6	B	261	268	anti-parallel
Strand 7	B	271	279	anti-parallel
Strand 8	B	294	301	parallel
Strand 9	B	320	326	anti-parallel
Strand 10	B	334	339	anti-parallel
Strand 11	B	358	369	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	14	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	115	120	anti-parallel
Strand 4	C	126	131	anti-parallel
Strand 5	C	137	144	anti-parallel
Strand 6	C	148	155	anti-parallel
Strand 7	C	189	199	anti-parallel
Strand 8	C	203	222	anti-parallel
Strand 9	C	50	58	anti-parallel
Strand 10	C	65	73	anti-parallel
Strand 11	C	82	89	anti-parallel
Strand 12	C	95	102	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	14	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	115	120	anti-parallel
Strand 4	C	126	131	anti-parallel
Strand 5	C	137	144	anti-parallel
Strand 6	C	148	155	anti-parallel
Strand 7	C	189	199	anti-parallel
Strand 8	C	203	222	anti-parallel
Strand 9	C	179	182	anti-parallel
Strand 10	C	174	176	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	45	46	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	240	first strand
Strand 2	C	243	251	anti-parallel
Strand 3	C	261	268	anti-parallel
Strand 4	C	271	279	anti-parallel
Strand 5	C	294	301	parallel
Strand 6	C	320	326	anti-parallel
Strand 7	C	334	348	anti-parallel
Strand 8	C	358	369	anti-parallel
Strand 9	C	375	385	anti-parallel
Strand 10	C	232	240	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	14	first strand
Strand 2	D	104	110	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	126	131	anti-parallel
Strand 5	D	137	144	anti-parallel
Strand 6	D	148	155	anti-parallel
Strand 7	D	189	196	anti-parallel
Strand 8	D	205	209	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	45	46	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	102	first strand
Strand 2	D	82	89	anti-parallel
Strand 3	D	65	73	anti-parallel
Strand 4	D	50	58	anti-parallel
Strand 5	D	216	222	anti-parallel
Strand 6	D	179	182	anti-parallel
Strand 7	D	174	176	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	240	first strand
Strand 2	D	243	251	anti-parallel
Strand 3	D	261	268	anti-parallel
Strand 4	D	271	279	anti-parallel
Strand 5	D	294	301	parallel
Strand 6	D	320	326	anti-parallel
Strand 7	D	334	348	anti-parallel
Strand 8	D	358	370	anti-parallel
Strand 9	D	375	385	anti-parallel
Strand 10	D	232	240	anti-parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	14	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	126	131	anti-parallel
Strand 5	E	137	144	anti-parallel
Strand 6	E	148	155	anti-parallel
Strand 7	E	189	199	anti-parallel
Strand 8	E	203	222	anti-parallel
Strand 9	E	50	58	anti-parallel
Strand 10	E	65	72	anti-parallel
Strand 11	E	82	89	anti-parallel
Strand 12	E	95	102	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	14	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	126	131	anti-parallel
Strand 5	E	137	144	anti-parallel
Strand 6	E	148	155	anti-parallel
Strand 7	E	189	199	anti-parallel
Strand 8	E	203	222	anti-parallel
Strand 9	E	179	182	anti-parallel
Strand 10	E	174	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	45	46	parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	240	first strand
Strand 2	E	243	251	anti-parallel
Strand 3	E	261	268	anti-parallel
Strand 4	E	271	279	anti-parallel
Strand 5	E	294	301	parallel
Strand 6	E	320	326	anti-parallel
Strand 7	E	333	348	anti-parallel
Strand 8	E	358	370	anti-parallel
Strand 9	E	375	385	anti-parallel
Strand 10	E	232	240	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	14	first strand
Strand 2	F	104	110	anti-parallel
Strand 3	F	115	120	anti-parallel
Strand 4	F	126	131	anti-parallel
Strand 5	F	137	144	anti-parallel
Strand 6	F	148	155	anti-parallel
Strand 7	F	189	196	anti-parallel
Strand 8	F	205	213	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	45	46	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	102	first strand
Strand 2	F	82	89	anti-parallel
Strand 3	F	65	72	anti-parallel
Strand 4	F	50	58	anti-parallel
Strand 5	F	216	222	anti-parallel
Strand 6	F	179	182	anti-parallel
Strand 7	F	174	176	anti-parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	240	first strand
Strand 2	F	243	251	anti-parallel
Strand 3	F	260	268	anti-parallel
Strand 4	F	271	279	anti-parallel
Strand 5	F	294	301	parallel
Strand 6	F	320	326	anti-parallel
Strand 7	F	333	348	anti-parallel
Strand 8	F	358	370	anti-parallel
Strand 9	F	375	385	anti-parallel
Strand 10	F	232	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMO