Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DMP entry

There are 6 chains in PDB entry 7DMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 277	THR 693
b	LEU 277	THR 693
A	LEU 17	THR 202
a	LEU 17	THR 202
C	MET 1	LEU 276
c	MET 1	LEU 276

There are 28 helices in PDB entry 7DMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	277	291	Right-handed alpha
Helix 2	AA2	B	313	325	Right-handed alpha
Helix 3	AA3	B	331	345	Right-handed alpha
Helix 4	AA4	B	479	492	Right-handed alpha
Helix 5	AA5	B	531	538	Right-handed alpha
Helix 6	AA6	B	595	599	Right-handed 310
Helix 7	AA7	B	683	688	Right-handed alpha
Helix 8	AA8	b	278	285	Right-handed alpha
Helix 9	AA9	b	286	289	Right-handed 310
Helix 10	AB1	b	314	325	Right-handed alpha
Helix 11	AB2	b	334	345	Right-handed alpha
Helix 12	AB3	b	479	494	Right-handed alpha
Helix 13	AB4	b	533	538	Right-handed alpha
Helix 14	AB5	b	595	599	Right-handed 310
Helix 15	AB6	b	683	690	Right-handed alpha
Helix 16	AB7	C	5	9	Right-handed 310
Helix 17	AB8	C	24	39	Right-handed alpha
Helix 18	AB9	C	89	96	Right-handed alpha
Helix 19	AC1	C	97	99	Right-handed 310
Helix 20	AC2	C	135	149	Right-handed alpha
Helix 21	AC3	C	177	181	Right-handed 310
Helix 22	AC4	C	271	276	Right-handed alpha
Helix 23	AC5	c	24	39	Right-handed alpha
Helix 24	AC6	c	64	68	Right-handed 310
Helix 25	AC7	c	89	96	Right-handed alpha
Helix 26	AC8	c	136	151	Right-handed alpha
Helix 27	AC9	c	183	187	Right-handed 310
Helix 28	AD1	c	271	276	Right-handed alpha

There are 16 sheets in PDB entry 7DMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	429	433	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	354	358	anti-parallel
Strand 5	B	642	647	parallel
Strand 6	B	634	637	anti-parallel
Strand 7	B	623	627	anti-parallel
Strand 8	B	608	612	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	542	544	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	441	442	first strand
Strand 2	b	431	433	anti-parallel
Strand 3	b	365	372	anti-parallel
Strand 4	b	349	358	anti-parallel
Strand 5	b	642	647	parallel
Strand 6	b	633	637	anti-parallel
Strand 7	b	623	627	anti-parallel
Strand 8	b	608	612	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	497	498	first strand
Strand 2	b	542	543	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	43	49	anti-parallel
Strand 4	A	52	60	anti-parallel
Strand 5	A	66	72	anti-parallel
Strand 6	A	75	83	anti-parallel
Strand 7	A	89	95	anti-parallel
Strand 8	A	98	106	anti-parallel
Strand 9	A	112	117	anti-parallel
Strand 10	A	124	129	anti-parallel
Strand 11	A	136	142	anti-parallel
Strand 12	A	145	146	anti-parallel

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There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	43	49	anti-parallel
Strand 4	A	52	60	anti-parallel
Strand 5	A	66	72	anti-parallel
Strand 6	A	75	83	anti-parallel
Strand 7	A	89	95	anti-parallel
Strand 8	A	98	106	anti-parallel
Strand 9	A	112	117	anti-parallel
Strand 10	A	124	129	anti-parallel
Strand 11	A	136	142	anti-parallel
Strand 12	A	150	153	anti-parallel
Strand 13	A	157	161	anti-parallel
Strand 14	A	172	176	anti-parallel
Strand 15	A	180	184	anti-parallel
Strand 16	A	196	200	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	34	37	first strand
Strand 2	a	43	49	anti-parallel
Strand 3	a	52	60	anti-parallel
Strand 4	a	66	72	anti-parallel
Strand 5	a	75	83	anti-parallel
Strand 6	a	89	95	anti-parallel
Strand 7	a	98	106	anti-parallel
Strand 8	a	112	117	anti-parallel
Strand 9	a	122	129	anti-parallel
Strand 10	a	136	142	anti-parallel
Strand 11	a	145	146	anti-parallel

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There are 15 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	34	37	first strand
Strand 2	a	43	49	anti-parallel
Strand 3	a	52	60	anti-parallel
Strand 4	a	66	72	anti-parallel
Strand 5	a	75	83	anti-parallel
Strand 6	a	89	95	anti-parallel
Strand 7	a	98	106	anti-parallel
Strand 8	a	112	117	anti-parallel
Strand 9	a	122	129	anti-parallel
Strand 10	a	136	142	anti-parallel
Strand 11	a	150	153	anti-parallel
Strand 12	a	157	161	anti-parallel
Strand 13	a	173	176	anti-parallel
Strand 14	a	180	186	anti-parallel
Strand 15	a	193	200	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	163	164	first strand
Strand 2	a	167	168	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	59	62	anti-parallel
Strand 3	C	72	75	anti-parallel
Strand 4	C	83	84	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	188	189	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	230	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	247	251	anti-parallel
Strand 4	C	259	262	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	43	48	first strand
Strand 2	c	59	63	anti-parallel
Strand 3	c	72	74	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	110	113	first strand
Strand 2	c	132	135	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	153	154	first strand
Strand 2	c	188	189	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	226	230	first strand
Strand 2	c	237	241	anti-parallel
Strand 3	c	247	251	anti-parallel
Strand 4	c	258	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMP