Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DMQ entry

There are 3 chains in PDB entry 7DMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 341GLU 1383
B
 A 5 A 57
C
 U 3 U 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7DMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
342 346Right-handed 310
Helix 2
AA2
A
351 363Right-handed alpha
Helix 3
AA3
A
366 376Right-handed alpha
Helix 4
AA4
A
382 392Right-handed alpha
Helix 5
AA5
A
400 412Right-handed alpha
Helix 6
AA6
A
421 448Right-handed alpha
Helix 7
AA7
A
471 493Right-handed alpha
Helix 8
AA8
A
502 506Right-handed 310
Helix 9
AA9
A
512 524Right-handed alpha
Helix 10
AB1
A
562 572Right-handed alpha
Helix 11
AB2
A
576 580Right-handed 310
Helix 12
AB3
A
588 602Right-handed alpha
Helix 13
AB4
A
615 628Right-handed alpha
Helix 14
AB5
A
649 656Right-handed alpha
Helix 15
AB6
A
672 685Right-handed alpha
Helix 16
AB7
A
699 718Right-handed alpha
Helix 17
AB8
A
731 741Right-handed alpha
Helix 18
AB9
A
749 763Right-handed alpha
Helix 19
AC1
A
768 789Right-handed alpha
Helix 20
AC2
A
806 814Right-handed alpha
Helix 21
AC3
A
834 845Right-handed alpha
Helix 22
AC4
A
850 867Right-handed alpha
Helix 23
AC5
A
869 871Right-handed 310
Helix 24
AC6
A
872 882Right-handed alpha
Helix 25
AC7
A
901 911Right-handed alpha
Helix 26
AC8
A
1017 1033Right-handed alpha
Helix 27
AC9
A
1060 1065Right-handed alpha
Helix 28
AD1
A
1071 1077Right-handed alpha
Helix 29
AD2
A
1079 1084Right-handed alpha
Helix 30
AD3
A
1093 1097Right-handed 310
Helix 31
AD4
A
1102 1111Right-handed alpha
Helix 32
AD5
A
1122 1131Right-handed alpha
Helix 33
AD6
A
1149 1170Right-handed alpha
Helix 34
AD7
A
1175 1209Right-handed alpha
Helix 35
AD8
A
1245 1260Right-handed alpha
Helix 36
AD9
A
1276 1281Right-handed alpha
Helix 37
AE1
A
1284 1289Right-handed alpha
Helix 38
AE2
A
1296 1305Right-handed alpha
Helix 39
AE3
A
1317 1322Right-handed alpha
Helix 40
AE4
A
1323 1327Right-handed 310
Helix 41
AE5
A
1332 1337Right-handed alpha
Helix 42
AE6
A
1367 1381Right-handed alpha
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There are 3 sheets in PDB entry 7DMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
554 556anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1217first strand
Strand 2
A
1241 1242anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1329 1331first strand
Strand 2
A
1353 1355anti-parallel
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