Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DMW entry

There are 5 chains in PDB entry 7DMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 90GLN 289
B
 GLY 91GLN 289
C
 HIS 90GLN 289
D
 THR 92MET 286
E
 HIS 90GLN 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7DMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 105Right-handed alpha
Helix 2
AA2
A
105 117Right-handed alpha
Helix 3
AA3
A
128 138Right-handed alpha
Helix 4
AA4
A
173 179Right-handed 310
Helix 5
AA5
A
192 206Right-handed alpha
Helix 6
AA6
A
217 227Right-handed alpha
Helix 7
AA7
A
237 239Right-handed 310
Helix 8
AA8
A
267 272Right-handed alpha
Helix 9
AA9
A
273 287Right-handed alpha
Helix 10
AB1
B
99 105Right-handed alpha
Helix 11
AB2
B
105 117Right-handed alpha
Helix 12
AB3
B
128 138Right-handed alpha
Helix 13
AB4
B
173 179Right-handed 310
Helix 14
AB5
B
192 206Right-handed alpha
Helix 15
AB6
B
217 227Right-handed alpha
Helix 16
AB7
B
237 239Right-handed 310
Helix 17
AB8
B
267 272Right-handed alpha
Helix 18
AB9
B
273 289Right-handed alpha
Helix 19
AC1
C
99 105Right-handed alpha
Helix 20
AC2
C
105 117Right-handed alpha
Helix 21
AC3
C
128 138Right-handed alpha
Helix 22
AC4
C
173 180Right-handed 310
Helix 23
AC5
C
192 206Right-handed alpha
Helix 24
AC6
C
217 227Right-handed alpha
Helix 25
AC7
C
237 239Right-handed 310
Helix 26
AC8
C
267 273Right-handed alpha
Helix 27
AC9
C
273 288Right-handed alpha
Helix 28
AD1
D
99 105Right-handed alpha
Helix 29
AD2
D
105 116Right-handed alpha
Helix 30
AD3
D
128 138Right-handed alpha
Helix 31
AD4
D
173 179Right-handed 310
Helix 32
AD5
D
192 206Right-handed alpha
Helix 33
AD6
D
217 227Right-handed alpha
Helix 34
AD7
D
237 239Right-handed 310
Helix 35
AD8
D
267 272Right-handed 310
Helix 36
AD9
D
273 286Right-handed alpha
Helix 37
AE1
E
99 105Right-handed alpha
Helix 38
AE2
E
105 117Right-handed alpha
Helix 39
AE3
E
128 138Right-handed alpha
Helix 40
AE4
E
191 199Right-handed alpha
Helix 41
AE5
E
217 228Right-handed alpha
Helix 42
AE6
E
237 239Right-handed 310
Helix 43
AE7
E
267 272Right-handed 310
Helix 44
AE8
E
273 288Right-handed alpha
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There are 8 sheets in PDB entry 7DMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
213 215parallel
Strand 3
C
122 127parallel
Strand 4
C
93 98parallel
Strand 5
C
143 147parallel
Strand 6
C
259 266anti-parallel
Strand 7
C
155 168anti-parallel
Strand 8
C
246 249anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
155 168anti-parallel
Strand 3
A
259 266anti-parallel
Strand 4
A
143 147anti-parallel
Strand 5
A
93 98parallel
Strand 6
A
122 127parallel
Strand 7
C
211 215parallel
Strand 8
C
184 187parallel
Strand 9
C
231 235parallel
Strand 10
C
155 168anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
155 168anti-parallel
Strand 3
B
155 168anti-parallel
Strand 4
B
259 266anti-parallel
Strand 5
B
143 147anti-parallel
Strand 6
B
93 98parallel
Strand 7
B
122 127parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 249first strand
Strand 2
B
155 168anti-parallel
Strand 3
B
231 235anti-parallel
Strand 4
B
184 187parallel
Strand 5
B
213 215parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
232 235first strand
Strand 2
D
155 168anti-parallel
Strand 3
D
246 249anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
232 235first strand
Strand 2
D
155 168anti-parallel
Strand 3
D
259 266anti-parallel
Strand 4
D
143 147anti-parallel
Strand 5
D
93 98parallel
Strand 6
D
122 127parallel
Strand 7
E
213 215parallel
Strand 8
E
186 187parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 187first strand
Strand 2
D
213 215parallel
Strand 3
E
122 127parallel
Strand 4
E
93 98parallel
Strand 5
E
143 147parallel
Strand 6
E
259 266anti-parallel
Strand 7
E
155 168anti-parallel
Strand 8
E
232 235anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 187first strand
Strand 2
D
213 215parallel
Strand 3
E
122 127parallel
Strand 4
E
93 98parallel
Strand 5
E
143 147parallel
Strand 6
E
259 266anti-parallel
Strand 7
E
155 168anti-parallel
Strand 8
E
246 249anti-parallel
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