Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DMX entry

There are 8 chains in PDB entry 7DMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	PHE 231
A	ASN 235	PRO 242
B	VAL 2	PHE 231
B	ASN 235	PRO 242
C	ILE 3	PHE 231
C	ASN 235	PRO 242
D	ILE 3	PHE 231
D	ASN 235	ARG 243

There are 8 helices in PDB entry 7DMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	224	229	Right-handed alpha
Helix 3	AA3	B	7	11	Right-handed 310
Helix 4	AA4	B	224	229	Right-handed alpha
Helix 5	AA5	C	7	11	Right-handed 310
Helix 6	AA6	C	224	229	Right-handed alpha
Helix 7	AA7	D	7	11	Right-handed 310
Helix 8	AA8	D	224	229	Right-handed alpha

There are 4 sheets in PDB entry 7DMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	80	91	anti-parallel
Strand 3	A	96	106	anti-parallel
Strand 4	A	15	23	anti-parallel
Strand 5	A	28	38	anti-parallel
Strand 6	A	41	51	anti-parallel
Strand 7	A	178	188	parallel
Strand 8	A	191	202	anti-parallel
Strand 9	A	207	216	anti-parallel
Strand 10	A	135	145	anti-parallel
Strand 11	A	118	129	anti-parallel
Strand 12	A	70	77	anti-parallel
Strand 13	A	80	91	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	80	91	anti-parallel
Strand 3	B	96	106	anti-parallel
Strand 4	B	15	23	anti-parallel
Strand 5	B	28	38	anti-parallel
Strand 6	B	41	51	anti-parallel
Strand 7	B	178	188	parallel
Strand 8	B	191	201	anti-parallel
Strand 9	B	207	216	anti-parallel
Strand 10	B	135	145	anti-parallel
Strand 11	B	118	129	anti-parallel
Strand 12	B	70	77	anti-parallel
Strand 13	B	80	91	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	80	91	anti-parallel
Strand 3	C	96	106	anti-parallel
Strand 4	C	15	23	anti-parallel
Strand 5	C	28	38	anti-parallel
Strand 6	C	41	51	anti-parallel
Strand 7	C	178	188	parallel
Strand 8	C	191	202	anti-parallel
Strand 9	C	207	216	anti-parallel
Strand 10	C	135	145	anti-parallel
Strand 11	C	118	129	anti-parallel
Strand 12	C	70	77	anti-parallel
Strand 13	C	80	91	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	67	first strand
Strand 2	D	80	91	anti-parallel
Strand 3	D	96	106	anti-parallel
Strand 4	D	15	23	anti-parallel
Strand 5	D	28	38	anti-parallel
Strand 6	D	41	51	anti-parallel
Strand 7	D	178	188	parallel
Strand 8	D	191	202	anti-parallel
Strand 9	D	207	216	anti-parallel
Strand 10	D	135	145	anti-parallel
Strand 11	D	118	129	anti-parallel
Strand 12	D	70	77	anti-parallel
Strand 13	D	80	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DMX