Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DN0 entry

There are 6 chains in PDB entry 7DN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	VAL 437
A	MET 1	VAL 437
B	MET 1	VAL 437
C	MET 1	VAL 437
E	MET 1	GLN 436
F	MET 1	GLN 436

There are113 helices in PDB entry 7DN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	10	28	Right-handed alpha
Helix 2	AA2	D	48	51	Right-handed 310
Helix 3	AA3	D	74	81	Right-handed alpha
Helix 4	AA4	D	102	108	Right-handed alpha
Helix 5	AA5	D	114	126	Right-handed alpha
Helix 6	AA6	D	144	161	Right-handed alpha
Helix 7	AA7	D	182	195	Right-handed alpha
Helix 8	AA8	D	206	216	Right-handed alpha
Helix 9	AA9	D	223	244	Right-handed alpha
Helix 10	AB1	D	253	260	Right-handed alpha
Helix 11	AB2	D	287	295	Right-handed alpha
Helix 12	AB3	D	297	301	Right-handed 310
Helix 13	AB4	D	306	310	Right-handed 310
Helix 14	AB5	D	324	336	Right-handed alpha
Helix 15	AB6	D	383	398	Right-handed alpha
Helix 16	AB7	D	404	410	Right-handed alpha
Helix 17	AB8	D	415	437	Right-handed alpha
Helix 18	AB9	A	10	29	Right-handed alpha
Helix 19	AC1	A	48	51	Right-handed 310
Helix 20	AC2	A	72	77	Right-handed alpha
Helix 21	AC3	A	102	108	Right-handed alpha
Helix 22	AC4	A	110	113	Right-handed 310
Helix 23	AC5	A	114	126	Right-handed alpha
Helix 24	AC6	A	144	161	Right-handed alpha
Helix 25	AC7	A	182	194	Right-handed alpha
Helix 26	AC8	A	195	197	Right-handed 310
Helix 27	AC9	A	206	216	Right-handed alpha
Helix 28	AD1	A	223	240	Right-handed alpha
Helix 29	AD2	A	252	260	Right-handed alpha
Helix 30	AD3	A	287	295	Right-handed alpha
Helix 31	AD4	A	296	301	Right-handed 310
Helix 32	AD5	A	306	310	Right-handed 310
Helix 33	AD6	A	324	336	Right-handed alpha
Helix 34	AD7	A	383	398	Right-handed alpha
Helix 35	AD8	A	404	410	Right-handed alpha
Helix 36	AD9	A	416	437	Right-handed alpha
Helix 37	AE1	B	10	28	Right-handed alpha
Helix 38	AE2	B	48	51	Right-handed 310
Helix 39	AE3	B	71	79	Right-handed alpha
Helix 40	AE4	B	102	108	Right-handed alpha
Helix 41	AE5	B	110	113	Right-handed 310
Helix 42	AE6	B	114	126	Right-handed alpha
Helix 43	AE7	B	144	161	Right-handed alpha
Helix 44	AE8	B	182	194	Right-handed alpha
Helix 45	AE9	B	195	197	Right-handed 310
Helix 46	AF1	B	206	216	Right-handed alpha
Helix 47	AF2	B	223	244	Right-handed alpha
Helix 48	AF3	B	251	259	Right-handed alpha
Helix 49	AF4	B	287	296	Right-handed alpha
Helix 50	AF5	B	297	301	Right-handed 310
Helix 51	AF6	B	306	310	Right-handed 310
Helix 52	AF7	B	324	336	Right-handed alpha
Helix 53	AF8	B	383	401	Right-handed alpha
Helix 54	AF9	B	404	410	Right-handed alpha
Helix 55	AG1	B	415	437	Right-handed alpha
Helix 56	AG2	C	10	28	Right-handed alpha
Helix 57	AG3	C	48	51	Right-handed 310
Helix 58	AG4	C	71	77	Right-handed alpha
Helix 59	AG5	C	102	108	Right-handed alpha
Helix 60	AG6	C	110	113	Right-handed 310
Helix 61	AG7	C	114	127	Right-handed alpha
Helix 62	AG8	C	144	161	Right-handed alpha
Helix 63	AG9	C	182	194	Right-handed alpha
Helix 64	AH1	C	206	216	Right-handed alpha
Helix 65	AH2	C	223	244	Right-handed alpha
Helix 66	AH3	C	253	260	Right-handed alpha
Helix 67	AH4	C	287	295	Right-handed alpha
Helix 68	AH5	C	296	301	Right-handed 310
Helix 69	AH6	C	306	310	Right-handed 310
Helix 70	AH7	C	324	336	Right-handed alpha
Helix 71	AH8	C	383	399	Right-handed alpha
Helix 72	AH9	C	404	410	Right-handed alpha
Helix 73	AI1	C	416	437	Right-handed alpha
Helix 74	AI2	E	10	28	Right-handed alpha
Helix 75	AI3	E	41	48	Right-handed alpha
Helix 76	AI4	E	49	51	Right-handed 310
Helix 77	AI5	E	71	81	Right-handed alpha
Helix 78	AI6	E	102	108	Right-handed alpha
Helix 79	AI7	E	110	128	Right-handed alpha
Helix 80	AI8	E	145	161	Right-handed alpha
Helix 81	AI9	E	182	197	Right-handed alpha
Helix 82	AJ1	E	205	216	Right-handed alpha
Helix 83	AJ2	E	223	240	Right-handed alpha
Helix 84	AJ3	E	241	243	Right-handed 310
Helix 85	AJ4	E	251	260	Right-handed alpha
Helix 86	AJ5	E	287	296	Right-handed alpha
Helix 87	AJ6	E	306	310	Right-handed 310
Helix 88	AJ7	E	324	339	Right-handed alpha
Helix 89	AJ8	E	340	343	Right-handed 310
Helix 90	AJ9	E	384	401	Right-handed alpha
Helix 91	AK1	E	404	410	Right-handed alpha
Helix 92	AK2	E	414	435	Right-handed alpha
Helix 93	AK3	F	11	29	Right-handed alpha
Helix 94	AK4	F	48	51	Right-handed 310
Helix 95	AK5	F	72	81	Right-handed alpha
Helix 96	AK6	F	88	90	Right-handed 310
Helix 97	AK7	F	102	108	Right-handed alpha
Helix 98	AK8	F	110	129	Right-handed alpha
Helix 99	AK9	F	144	161	Right-handed alpha
Helix 100	AL1	F	182	195	Right-handed alpha
Helix 101	AL2	F	206	216	Right-handed alpha
Helix 102	AL3	F	223	240	Right-handed alpha
Helix 103	AL4	F	241	243	Right-handed 310
Helix 104	AL5	F	251	260	Right-handed alpha
Helix 105	AL6	F	280	284	Right-handed 310
Helix 106	AL7	F	287	296	Right-handed alpha
Helix 107	AL8	F	297	301	Right-handed 310
Helix 108	AL9	F	306	310	Right-handed 310
Helix 109	AM1	F	324	339	Right-handed alpha
Helix 110	AM2	F	340	343	Right-handed 310
Helix 111	AM3	F	384	400	Right-handed alpha
Helix 112	AM4	F	405	410	Right-handed alpha
Helix 113	AM5	F	414	435	Right-handed alpha

There are 17 sheets in PDB entry 7DN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	65	68	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	139	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	273	first strand
Strand 2	D	374	381	anti-parallel
Strand 3	D	312	320	anti-parallel
Strand 4	D	352	356	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	374	381	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	352	356	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	4	9	parallel
Strand 4	B	134	139	parallel
Strand 5	B	165	172	parallel
Strand 6	B	202	205	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	374	381	anti-parallel
Strand 3	B	312	320	anti-parallel
Strand 4	B	352	356	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	138	parallel
Strand 5	C	165	172	parallel
Strand 6	C	202	205	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	374	381	anti-parallel
Strand 3	C	312	320	anti-parallel
Strand 4	C	352	356	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	4	9	parallel
Strand 4	E	134	140	parallel
Strand 5	E	165	166	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	4	9	parallel
Strand 4	E	134	140	parallel
Strand 5	E	169	171	parallel
Strand 6	E	201	204	parallel
Strand 7	E	267	273	parallel
Strand 8	E	374	381	anti-parallel
Strand 9	E	312	320	anti-parallel
Strand 10	E	351	356	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	60	63	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	65	69	parallel
Strand 3	F	2	9	parallel
Strand 4	F	131	140	parallel
Strand 5	F	165	171	parallel
Strand 6	F	200	204	parallel
Strand 7	F	267	273	parallel
Strand 8	F	374	381	anti-parallel
Strand 9	F	312	320	anti-parallel
Strand 10	F	351	356	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN0