Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DN1 entry

There are 2 chains in PDB entry 7DN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PRO 279
B
 SER 0PRO 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7DN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
26 31Right-handed 310
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
70 82Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
127 131Right-handed 310
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
145 163Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
184 206Right-handed alpha
Helix 11
AB2
A
221 225Right-handed 310
Helix 12
AB3
A
228 239Right-handed alpha
Helix 13
AB4
A
246 249Right-handed 310
Helix 14
AB5
A
250 259Right-handed alpha
Helix 15
AB6
A
260 263Right-handed 310
Helix 16
AB7
B
9 13Right-handed 310
Helix 17
AB8
B
25 31Right-handed 310
Helix 18
AB9
B
44 57Right-handed alpha
Helix 19
AC1
B
70 82Right-handed alpha
Helix 20
AC2
B
94 110Right-handed alpha
Helix 21
AC3
B
127 131Right-handed 310
Helix 22
AC4
B
133 145Right-handed alpha
Helix 23
AC5
B
145 163Right-handed alpha
Helix 24
AC6
B
172 176Right-handed 310
Helix 25
AC7
B
184 206Right-handed alpha
Helix 26
AC8
B
222 226Right-handed 310
Helix 27
AC9
B
228 238Right-handed alpha
Helix 28
AD1
B
246 249Right-handed 310
Helix 29
AD2
B
250 259Right-handed alpha
Helix 30
AD3
B
260 263Right-handed 310
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There are 2 sheets in PDB entry 7DN1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
60 65parallel
Strand 3
A
36 39parallel
Strand 4
A
114 117parallel
Strand 5
A
166 170parallel
Strand 6
A
210 216parallel
Strand 7
A
269 272parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
60 65parallel
Strand 3
B
36 39parallel
Strand 4
B
114 117parallel
Strand 5
B
166 170parallel
Strand 6
B
210 216parallel
Strand 7
B
269 272parallel
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