Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DN5 entry

There are 6 chains in PDB entry 7DN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	LEU 473
A	VAL 11	LEU 473
C	SER 2	LEU 473
D	LYS 20	LEU 473
E	SER 2	LEU 473
F	LYS 20	LEU 473

There are 44 helices in PDB entry 7DN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	221	225	Right-handed 310
Helix 2	AA2	B	233	238	Right-handed alpha
Helix 3	AA3	B	272	276	Right-handed 310
Helix 4	AA4	B	280	285	Right-handed 310
Helix 5	AA5	B	385	392	Right-handed alpha
Helix 6	AA6	B	394	402	Right-handed alpha
Helix 7	AA7	B	438	443	Right-handed 310
Helix 8	AA8	B	463	471	Right-handed alpha
Helix 9	AA9	A	221	225	Right-handed 310
Helix 10	AB1	A	233	240	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	383	394	Right-handed alpha
Helix 13	AB4	A	395	401	Right-handed alpha
Helix 14	AB5	A	439	443	Right-handed 310
Helix 15	AB6	A	461	471	Right-handed alpha
Helix 16	AB7	C	80	84	Right-handed 310
Helix 17	AB8	C	355	357	Right-handed 310
Helix 18	AB9	C	383	394	Right-handed alpha
Helix 19	AC1	C	407	411	Right-handed 310
Helix 20	AC2	C	461	472	Right-handed alpha
Helix 21	AC3	D	233	238	Right-handed alpha
Helix 22	AC4	D	272	276	Right-handed 310
Helix 23	AC5	D	280	284	Right-handed 310
Helix 24	AC6	D	385	394	Right-handed alpha
Helix 25	AC7	D	396	401	Right-handed alpha
Helix 26	AC8	D	438	443	Right-handed 310
Helix 27	AC9	D	457	461	Right-handed 310
Helix 28	AD1	D	463	469	Right-handed alpha
Helix 29	AD2	E	80	84	Right-handed 310
Helix 30	AD3	E	233	238	Right-handed alpha
Helix 31	AD4	E	355	359	Right-handed 310
Helix 32	AD5	E	383	394	Right-handed alpha
Helix 33	AD6	E	395	400	Right-handed alpha
Helix 34	AD7	E	438	442	Right-handed 310
Helix 35	AD8	E	464	469	Right-handed alpha
Helix 36	AD9	F	221	225	Right-handed 310
Helix 37	AE1	F	233	239	Right-handed alpha
Helix 38	AE2	F	272	276	Right-handed 310
Helix 39	AE3	F	280	284	Right-handed 310
Helix 40	AE4	F	383	394	Right-handed alpha
Helix 41	AE5	F	395	399	Right-handed 310
Helix 42	AE6	F	408	412	Right-handed 310
Helix 43	AE7	F	438	443	Right-handed 310
Helix 44	AE8	F	461	471	Right-handed alpha

There are 48 sheets in PDB entry 7DN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	107	first strand
Strand 2	B	372	381	anti-parallel
Strand 3	B	35	37	anti-parallel
Strand 4	B	454	455	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	365	366	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	330	335	anti-parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	248	254	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	146	150	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	231	232	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	291	296	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	C	359	369	parallel
Strand 3	C	42	46	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	C	359	369	parallel
Strand 3	C	342	347	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	360	362	anti-parallel
Strand 3	A	266	267	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	38	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	97	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	341	345	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	446	448	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	146	150	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	254	first strand
Strand 2	A	154	160	anti-parallel
Strand 3	A	332	335	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	291	295	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	374	381	anti-parallel
Strand 3	C	29	37	anti-parallel
Strand 4	C	454	455	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	63	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	254	first strand
Strand 2	C	154	160	anti-parallel
Strand 3	C	332	335	anti-parallel
Strand 4	C	72	77	anti-parallel
Strand 5	C	328	329	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	254	first strand
Strand 2	C	154	160	anti-parallel
Strand 3	C	332	335	anti-parallel
Strand 4	C	72	77	anti-parallel
Strand 5	C	446	448	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	371	372	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	193	194	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	188	190	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	291	292	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	368	parallel
Strand 3	D	43	46	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	368	parallel
Strand 3	D	342	347	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	38	first strand
Strand 2	D	371	380	anti-parallel
Strand 3	D	98	108	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	61	63	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	328	335	anti-parallel
Strand 4	D	72	77	anti-parallel
Strand 5	D	446	449	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	256	262	anti-parallel
Strand 3	D	291	296	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	171	first strand
Strand 2	D	189	194	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	37	first strand
Strand 2	E	373	380	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	362	368	anti-parallel
Strand 3	E	342	344	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	61	63	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	254	first strand
Strand 2	E	154	161	anti-parallel
Strand 3	E	328	335	anti-parallel
Strand 4	E	72	77	anti-parallel
Strand 5	E	446	448	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	124	first strand
Strand 2	E	146	150	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	171	first strand
Strand 2	E	189	194	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	262	first strand
Strand 2	E	291	295	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	376	first strand
Strand 2	F	34	39	anti-parallel
Strand 3	F	454	455	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	361	366	anti-parallel
Strand 3	F	342	345	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	61	63	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	331	first strand
Strand 2	F	74	76	anti-parallel
Strand 3	F	446	448	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	378	381	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	338	339	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	146	150	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	254	first strand
Strand 2	F	154	158	anti-parallel
Strand 3	F	334	335	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	171	first strand
Strand 2	F	189	194	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	291	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN5