Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DN8 entry

There are 8 chains in PDB entry 7DN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 0	TYR 374
D	ARG -1	LEU 177
A	PRO 0	TYR 374
B	ARG -1	LEU 177
E	PRO 0	TYR 374
F	ARG -1	LEU 177
G	PRO 0	TYR 374
H	ARG -1	LEU 177

There are 92 helices in PDB entry 7DN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	73	100	Right-handed alpha
Helix 2	AA2	C	100	116	Right-handed alpha
Helix 3	AA3	C	121	136	Right-handed alpha
Helix 4	AA4	C	148	155	Right-handed alpha
Helix 5	AA5	C	173	187	Right-handed alpha
Helix 6	AA6	C	188	192	Right-handed 310
Helix 7	AA7	C	196	200	Right-handed 310
Helix 8	AA8	C	217	221	Right-handed 310
Helix 9	AA9	C	237	241	Right-handed 310
Helix 10	AB1	C	249	253	Right-handed 310
Helix 11	AB2	C	270	274	Right-handed 310
Helix 12	AB3	C	279	287	Right-handed alpha
Helix 13	AB4	C	295	305	Right-handed alpha
Helix 14	AB5	C	319	323	Right-handed 310
Helix 15	AB6	C	351	367	Right-handed alpha
Helix 16	AB7	D	29	40	Right-handed alpha
Helix 17	AB8	D	74	83	Right-handed alpha
Helix 18	AB9	D	96	98	Right-handed 310
Helix 19	AC1	D	99	112	Right-handed alpha
Helix 20	AC2	D	113	117	Right-handed 310
Helix 21	AC3	D	135	144	Right-handed alpha
Helix 22	AC4	D	145	148	Right-handed 310
Helix 23	AC5	D	165	177	Right-handed alpha
Helix 24	AC6	A	73	100	Right-handed alpha
Helix 25	AC7	A	100	116	Right-handed alpha
Helix 26	AC8	A	121	136	Right-handed alpha
Helix 27	AC9	A	148	155	Right-handed alpha
Helix 28	AD1	A	173	187	Right-handed alpha
Helix 29	AD2	A	188	192	Right-handed 310
Helix 30	AD3	A	196	200	Right-handed 310
Helix 31	AD4	A	217	221	Right-handed 310
Helix 32	AD5	A	237	241	Right-handed 310
Helix 33	AD6	A	249	253	Right-handed 310
Helix 34	AD7	A	270	274	Right-handed 310
Helix 35	AD8	A	279	287	Right-handed alpha
Helix 36	AD9	A	295	305	Right-handed alpha
Helix 37	AE1	A	319	323	Right-handed 310
Helix 38	AE2	A	351	367	Right-handed alpha
Helix 39	AE3	B	29	40	Right-handed alpha
Helix 40	AE4	B	74	83	Right-handed alpha
Helix 41	AE5	B	96	98	Right-handed 310
Helix 42	AE6	B	99	112	Right-handed alpha
Helix 43	AE7	B	113	117	Right-handed 310
Helix 44	AE8	B	135	144	Right-handed alpha
Helix 45	AE9	B	145	148	Right-handed 310
Helix 46	AF1	B	165	177	Right-handed alpha
Helix 47	AF2	E	73	100	Right-handed alpha
Helix 48	AF3	E	100	116	Right-handed alpha
Helix 49	AF4	E	121	136	Right-handed alpha
Helix 50	AF5	E	148	155	Right-handed alpha
Helix 51	AF6	E	173	187	Right-handed alpha
Helix 52	AF7	E	188	192	Right-handed 310
Helix 53	AF8	E	196	200	Right-handed 310
Helix 54	AF9	E	217	221	Right-handed 310
Helix 55	AG1	E	237	241	Right-handed 310
Helix 56	AG2	E	249	253	Right-handed 310
Helix 57	AG3	E	270	274	Right-handed 310
Helix 58	AG4	E	279	287	Right-handed alpha
Helix 59	AG5	E	295	305	Right-handed alpha
Helix 60	AG6	E	319	323	Right-handed 310
Helix 61	AG7	E	351	367	Right-handed alpha
Helix 62	AG8	F	29	40	Right-handed alpha
Helix 63	AG9	F	74	83	Right-handed alpha
Helix 64	AH1	F	96	98	Right-handed 310
Helix 65	AH2	F	99	112	Right-handed alpha
Helix 66	AH3	F	113	117	Right-handed 310
Helix 67	AH4	F	135	144	Right-handed alpha
Helix 68	AH5	F	145	148	Right-handed 310
Helix 69	AH6	F	165	176	Right-handed alpha
Helix 70	AH7	G	73	100	Right-handed alpha
Helix 71	AH8	G	100	116	Right-handed alpha
Helix 72	AH9	G	122	136	Right-handed alpha
Helix 73	AI1	G	148	155	Right-handed alpha
Helix 74	AI2	G	173	187	Right-handed alpha
Helix 75	AI3	G	188	192	Right-handed 310
Helix 76	AI4	G	196	200	Right-handed 310
Helix 77	AI5	G	217	221	Right-handed 310
Helix 78	AI6	G	237	241	Right-handed 310
Helix 79	AI7	G	249	253	Right-handed 310
Helix 80	AI8	G	270	274	Right-handed 310
Helix 81	AI9	G	279	287	Right-handed alpha
Helix 82	AJ1	G	295	305	Right-handed alpha
Helix 83	AJ2	G	319	323	Right-handed 310
Helix 84	AJ3	G	351	367	Right-handed alpha
Helix 85	AJ4	H	29	40	Right-handed alpha
Helix 86	AJ5	H	74	83	Right-handed alpha
Helix 87	AJ6	H	96	98	Right-handed 310
Helix 88	AJ7	H	99	112	Right-handed alpha
Helix 89	AJ8	H	113	117	Right-handed 310
Helix 90	AJ9	H	135	144	Right-handed alpha
Helix 91	AK1	H	145	148	Right-handed 310
Helix 92	AK2	H	165	177	Right-handed alpha

There are 12 sheets in PDB entry 7DN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	255	258	anti-parallel
Strand 3	C	325	328	anti-parallel
Strand 4	C	223	228	anti-parallel
Strand 5	C	137	142	anti-parallel
Strand 6	C	243	247	anti-parallel
Strand 7	C	338	344	anti-parallel
Strand 8	C	371	374	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	332	333	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	58	first strand
Strand 2	D	61	68	anti-parallel
Strand 3	D	17	23	parallel
Strand 4	D	87	93	parallel
Strand 5	D	120	126	parallel
Strand 6	D	153	157	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	255	258	anti-parallel
Strand 3	A	325	328	anti-parallel
Strand 4	A	223	228	anti-parallel
Strand 5	A	137	142	anti-parallel
Strand 6	A	243	247	anti-parallel
Strand 7	A	338	344	anti-parallel
Strand 8	A	371	374	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	332	333	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	61	68	anti-parallel
Strand 3	B	17	23	parallel
Strand 4	B	87	93	parallel
Strand 5	B	120	126	parallel
Strand 6	B	153	157	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	276	first strand
Strand 2	E	255	258	anti-parallel
Strand 3	E	325	328	anti-parallel
Strand 4	E	223	228	anti-parallel
Strand 5	E	137	142	anti-parallel
Strand 6	E	243	247	anti-parallel
Strand 7	E	338	344	anti-parallel
Strand 8	E	371	374	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	332	333	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	58	first strand
Strand 2	F	61	68	anti-parallel
Strand 3	F	17	23	parallel
Strand 4	F	87	93	parallel
Strand 5	F	120	126	parallel
Strand 6	F	153	157	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	275	276	first strand
Strand 2	G	255	258	anti-parallel
Strand 3	G	325	328	anti-parallel
Strand 4	G	223	228	anti-parallel
Strand 5	G	137	142	anti-parallel
Strand 6	G	243	247	anti-parallel
Strand 7	G	338	344	anti-parallel
Strand 8	G	371	374	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	158	first strand
Strand 2	G	332	333	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	17	23	parallel
Strand 4	H	87	93	parallel
Strand 5	H	120	126	parallel
Strand 6	H	153	157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DN8