Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DNH entry

There are 7 chains in PDB entry 7DNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	LEU 473
A	VAL 11	LEU 473
C	SER 2	LEU 473
D	LYS 20	LEU 473
E	SER 2	LEU 473
L	ASP 1	CYS 214
H	GLN 1	ILE 215

There are 47 helices in PDB entry 7DNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	233	238	Right-handed alpha
Helix 2	AA2	B	272	276	Right-handed 310
Helix 3	AA3	B	280	285	Right-handed 310
Helix 4	AA4	B	355	357	Right-handed 310
Helix 5	AA5	B	383	394	Right-handed alpha
Helix 6	AA6	B	394	402	Right-handed alpha
Helix 7	AA7	B	438	443	Right-handed 310
Helix 8	AA8	B	463	472	Right-handed alpha
Helix 9	AA9	A	221	225	Right-handed 310
Helix 10	AB1	A	233	239	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	324	328	Right-handed 310
Helix 13	AB4	A	355	357	Right-handed 310
Helix 14	AB5	A	383	394	Right-handed alpha
Helix 15	AB6	A	395	400	Right-handed alpha
Helix 16	AB7	A	439	443	Right-handed 310
Helix 17	AB8	A	457	460	Right-handed 310
Helix 18	AB9	A	461	472	Right-handed alpha
Helix 19	AC1	C	80	84	Right-handed 310
Helix 20	AC2	C	272	276	Right-handed 310
Helix 21	AC3	C	383	394	Right-handed alpha
Helix 22	AC4	C	407	411	Right-handed 310
Helix 23	AC5	C	438	442	Right-handed 310
Helix 24	AC6	C	457	460	Right-handed 310
Helix 25	AC7	C	461	472	Right-handed alpha
Helix 26	AC8	D	80	84	Right-handed 310
Helix 27	AC9	D	324	328	Right-handed 310
Helix 28	AD1	D	383	394	Right-handed alpha
Helix 29	AD2	D	395	401	Right-handed alpha
Helix 30	AD3	D	457	461	Right-handed 310
Helix 31	AD4	D	464	469	Right-handed alpha
Helix 32	AD5	E	80	84	Right-handed 310
Helix 33	AD6	E	209	214	Right-handed alpha
Helix 34	AD7	E	221	225	Right-handed 310
Helix 35	AD8	E	233	238	Right-handed alpha
Helix 36	AD9	E	272	276	Right-handed 310
Helix 37	AE1	E	324	326	Right-handed 310
Helix 38	AE2	E	355	357	Right-handed 310
Helix 39	AE3	E	383	394	Right-handed alpha
Helix 40	AE4	E	394	401	Right-handed alpha
Helix 41	AE5	E	438	442	Right-handed 310
Helix 42	AE6	E	461	472	Right-handed alpha
Helix 43	AE7	L	121	128	Right-handed alpha
Helix 44	AE8	L	183	189	Right-handed alpha
Helix 45	AE9	H	28	32	Right-handed 310
Helix 46	AF1	H	87	91	Right-handed 310
Helix 47	AF2	H	161	163	Right-handed 310

There are 50 sheets in PDB entry 7DNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	97	110	anti-parallel
Strand 3	B	369	381	anti-parallel
Strand 4	B	35	38	anti-parallel
Strand 5	B	454	455	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	359	367	anti-parallel
Strand 3	B	342	347	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	61	63	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	248	262	anti-parallel
Strand 3	B	154	160	anti-parallel
Strand 4	B	330	335	anti-parallel
Strand 5	B	72	77	anti-parallel
Strand 6	B	448	449	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	248	262	anti-parallel
Strand 3	C	300	301	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	146	150	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	231	232	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	C	359	381	parallel
Strand 3	C	103	110	anti-parallel
Strand 4	C	311	312	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	359	381	anti-parallel
Strand 3	C	342	347	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	38	first strand
Strand 2	C	359	381	anti-parallel
Strand 3	C	42	46	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	A	249	255	anti-parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	332	335	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	107	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	28	38	anti-parallel
Strand 4	A	454	455	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	365	368	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	446	447	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	146	150	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	231	232	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	291	295	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	E	266	267	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	63	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	447	first strand
Strand 2	C	74	77	parallel
Strand 3	C	328	335	anti-parallel
Strand 4	C	154	161	anti-parallel
Strand 5	C	249	255	anti-parallel
Strand 6	D	300	301	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	194	first strand
Strand 2	C	166	171	anti-parallel
Strand 3	C	231	232	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	262	first strand
Strand 2	C	291	295	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	380	parallel
Strand 3	D	29	38	anti-parallel
Strand 4	D	454	455	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	380	parallel
Strand 3	D	342	347	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	359	380	anti-parallel
Strand 3	D	98	109	anti-parallel
Strand 4	D	311	312	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	61	63	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	254	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	330	335	anti-parallel
Strand 4	D	72	75	anti-parallel
Strand 5	D	446	447	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	146	150	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	256	262	anti-parallel
Strand 3	D	291	296	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	194	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	231	232	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	359	381	parallel
Strand 3	E	28	37	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	359	381	anti-parallel
Strand 3	E	97	101	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	109	first strand
Strand 2	E	359	381	anti-parallel
Strand 3	E	342	347	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	254	first strand
Strand 2	E	154	161	anti-parallel
Strand 3	E	328	335	anti-parallel
Strand 4	E	72	77	anti-parallel
Strand 5	E	446	448	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	124	first strand
Strand 2	E	146	150	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	257	262	anti-parallel
Strand 3	E	291	295	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	193	194	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	172	first strand
Strand 2	E	188	190	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	71	73	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	114	117	parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	106	108	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	144	150	anti-parallel
Strand 3	H	179	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	144	150	anti-parallel
Strand 3	H	179	185	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	187	189	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	203	anti-parallel
Strand 3	H	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNH