Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DNK entry

There are 7 chains in PDB entry 7DNK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	CYS 214
H	GLU 1	LEU 214
B	SER 2	LEU 473
A	VAL 11	LEU 473
C	SER 2	LEU 473
D	LYS 20	LEU 473
E	SER 2	LEU 473

There are 50 helices in PDB entry 7DNK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	123	128	Right-handed alpha
Helix 2	AA2	L	182	189	Right-handed alpha
Helix 3	AA3	H	87	91	Right-handed 310
Helix 4	AA4	H	160	162	Right-handed 310
Helix 5	AA5	B	221	225	Right-handed 310
Helix 6	AA6	B	233	239	Right-handed alpha
Helix 7	AA7	B	272	276	Right-handed 310
Helix 8	AA8	B	280	284	Right-handed 310
Helix 9	AA9	B	355	357	Right-handed 310
Helix 10	AB1	B	383	392	Right-handed alpha
Helix 11	AB2	B	397	402	Right-handed alpha
Helix 12	AB3	B	438	443	Right-handed 310
Helix 13	AB4	B	461	471	Right-handed alpha
Helix 14	AB5	A	233	238	Right-handed alpha
Helix 15	AB6	A	272	276	Right-handed 310
Helix 16	AB7	A	280	284	Right-handed 310
Helix 17	AB8	A	355	357	Right-handed 310
Helix 18	AB9	A	383	394	Right-handed alpha
Helix 19	AC1	A	395	400	Right-handed alpha
Helix 20	AC2	A	438	443	Right-handed 310
Helix 21	AC3	A	461	472	Right-handed alpha
Helix 22	AC4	C	80	84	Right-handed 310
Helix 23	AC5	C	209	214	Right-handed alpha
Helix 24	AC6	C	221	225	Right-handed 310
Helix 25	AC7	C	272	276	Right-handed 310
Helix 26	AC8	C	280	284	Right-handed 310
Helix 27	AC9	C	383	394	Right-handed alpha
Helix 28	AD1	C	395	402	Right-handed alpha
Helix 29	AD2	C	439	443	Right-handed 310
Helix 30	AD3	C	457	460	Right-handed 310
Helix 31	AD4	C	461	472	Right-handed alpha
Helix 32	AD5	D	221	226	Right-handed alpha
Helix 33	AD6	D	233	239	Right-handed alpha
Helix 34	AD7	D	280	284	Right-handed 310
Helix 35	AD8	D	303	305	Right-handed 310
Helix 36	AD9	D	324	328	Right-handed 310
Helix 37	AE1	D	385	394	Right-handed alpha
Helix 38	AE2	D	394	401	Right-handed alpha
Helix 39	AE3	D	439	443	Right-handed 310
Helix 40	AE4	D	457	461	Right-handed 310
Helix 41	AE5	D	463	471	Right-handed alpha
Helix 42	AE6	E	80	84	Right-handed 310
Helix 43	AE7	E	221	226	Right-handed alpha
Helix 44	AE8	E	233	238	Right-handed alpha
Helix 45	AE9	E	272	276	Right-handed 310
Helix 46	AF1	E	355	358	Right-handed 310
Helix 47	AF2	E	383	394	Right-handed alpha
Helix 48	AF3	E	395	400	Right-handed alpha
Helix 49	AF4	E	438	443	Right-handed 310
Helix 50	AF5	E	463	472	Right-handed alpha

There are 54 sheets in PDB entry 7DNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	70	76	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	134	139	anti-parallel
Strand 3	L	173	176	anti-parallel
Strand 4	L	162	163	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	132	first strand
Strand 2	L	179	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	194	198	anti-parallel
Strand 4	L	201	207	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	112	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	158	first strand
Strand 2	H	198	201	anti-parallel
Strand 3	H	212	213	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	97	109	anti-parallel
Strand 3	B	370	381	anti-parallel
Strand 4	B	35	38	anti-parallel
Strand 5	B	454	455	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	363	366	anti-parallel
Strand 3	B	341	343	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	61	63	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	125	first strand
Strand 2	B	145	150	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	248	263	anti-parallel
Strand 3	B	290	296	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	248	263	anti-parallel
Strand 3	C	300	301	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	166	169	anti-parallel
Strand 3	B	231	232	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	C	359	364	parallel
Strand 3	C	342	347	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	A	248	255	anti-parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	330	335	anti-parallel
Strand 5	A	73	76	anti-parallel
Strand 6	A	446	448	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	359	360	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	38	first strand
Strand 2	A	370	381	anti-parallel
Strand 3	A	97	109	anti-parallel
Strand 4	A	311	312	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	365	366	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	146	150	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	167	169	anti-parallel
Strand 3	A	231	232	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	291	295	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	E	248	255	anti-parallel
Strand 3	E	154	161	anti-parallel
Strand 4	E	330	335	anti-parallel
Strand 5	E	72	76	anti-parallel
Strand 6	E	446	448	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	E	266	267	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	97	107	anti-parallel
Strand 3	C	373	381	anti-parallel
Strand 4	C	29	37	anti-parallel
Strand 5	C	454	455	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	367	369	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	77	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	156	159	anti-parallel
Strand 4	C	249	252	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	291	295	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	167	171	anti-parallel
Strand 3	C	229	232	anti-parallel
Strand 4	C	200	201	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	D	300	301	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	363	parallel
Strand 3	D	343	347	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	369	375	anti-parallel
Strand 3	D	103	110	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	365	367	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	248	262	anti-parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	330	335	anti-parallel
Strand 5	D	72	77	anti-parallel
Strand 6	D	446	449	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	248	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	378	380	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	338	339	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	171	first strand
Strand 2	D	189	194	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	360	374	parallel
Strand 3	E	36	37	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	360	374	anti-parallel
Strand 3	E	105	110	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	110	first strand
Strand 2	E	360	374	anti-parallel
Strand 3	E	342	344	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	30	first strand
Strand 2	E	378	381	anti-parallel
Strand 3	E	97	100	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	61	63	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	125	first strand
Strand 2	E	145	150	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	172	first strand
Strand 2	E	188	194	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	229	230	parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	262	first strand
Strand 2	E	291	295	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DNK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNK