Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DNL entry

There are 7 chains in PDB entry 7DNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	CYS 220
H	GLN 1	ILE 216
B	SER 2	LEU 473
A	VAL 11	LEU 473
C	SER 2	LEU 473
D	LYS 20	LEU 473
E	SER 2	LEU 473

There are 54 helices in PDB entry 7DNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	127	133	Right-handed alpha
Helix 2	AA2	L	189	193	Right-handed alpha
Helix 3	AA3	H	88	92	Right-handed 310
Helix 4	AA4	B	209	214	Right-handed alpha
Helix 5	AA5	B	233	239	Right-handed alpha
Helix 6	AA6	B	272	276	Right-handed 310
Helix 7	AA7	B	280	285	Right-handed 310
Helix 8	AA8	B	324	326	Right-handed 310
Helix 9	AA9	B	355	357	Right-handed 310
Helix 10	AB1	B	383	394	Right-handed alpha
Helix 11	AB2	B	438	443	Right-handed 310
Helix 12	AB3	B	457	460	Right-handed 310
Helix 13	AB4	B	461	472	Right-handed alpha
Helix 14	AB5	A	23	27	Right-handed 310
Helix 15	AB6	A	80	84	Right-handed 310
Helix 16	AB7	A	88	92	Right-handed 310
Helix 17	AB8	A	221	225	Right-handed 310
Helix 18	AB9	A	234	239	Right-handed alpha
Helix 19	AC1	A	272	276	Right-handed 310
Helix 20	AC2	A	324	328	Right-handed 310
Helix 21	AC3	A	383	394	Right-handed alpha
Helix 22	AC4	A	395	401	Right-handed alpha
Helix 23	AC5	A	439	443	Right-handed 310
Helix 24	AC6	A	461	472	Right-handed alpha
Helix 25	AC7	C	80	84	Right-handed 310
Helix 26	AC8	C	209	213	Right-handed 310
Helix 27	AC9	C	221	226	Right-handed alpha
Helix 28	AD1	C	272	276	Right-handed 310
Helix 29	AD2	C	280	284	Right-handed 310
Helix 30	AD3	C	355	357	Right-handed 310
Helix 31	AD4	C	383	394	Right-handed alpha
Helix 32	AD5	C	407	411	Right-handed 310
Helix 33	AD6	C	438	442	Right-handed 310
Helix 34	AD7	C	457	460	Right-handed 310
Helix 35	AD8	C	461	472	Right-handed alpha
Helix 36	AD9	D	209	214	Right-handed alpha
Helix 37	AE1	D	233	239	Right-handed alpha
Helix 38	AE2	D	272	276	Right-handed 310
Helix 39	AE3	D	280	284	Right-handed 310
Helix 40	AE4	D	383	394	Right-handed alpha
Helix 41	AE5	D	395	401	Right-handed alpha
Helix 42	AE6	D	438	443	Right-handed 310
Helix 43	AE7	D	457	461	Right-handed 310
Helix 44	AE8	D	463	472	Right-handed alpha
Helix 45	AE9	E	80	84	Right-handed 310
Helix 46	AF1	E	221	225	Right-handed 310
Helix 47	AF2	E	236	240	Right-handed 310
Helix 48	AF3	E	272	276	Right-handed 310
Helix 49	AF4	E	324	326	Right-handed 310
Helix 50	AF5	E	355	357	Right-handed 310
Helix 51	AF6	E	383	394	Right-handed alpha
Helix 52	AF7	E	395	400	Right-handed alpha
Helix 53	AF8	E	438	443	Right-handed 310
Helix 54	AF9	E	461	472	Right-handed alpha

There are 50 sheets in PDB entry 7DNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	68	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	91	92	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	60	first strand
Strand 2	L	51	55	anti-parallel
Strand 3	L	39	43	anti-parallel
Strand 4	L	94	96	anti-parallel
Strand 5	L	103	104	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	145	first strand
Strand 2	L	179	188	anti-parallel
Strand 3	L	165	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	160	first strand
Strand 2	L	150	156	anti-parallel
Strand 3	L	197	204	anti-parallel
Strand 4	L	211	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	79	85	anti-parallel
Strand 4	H	70	74	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	118	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	59	60	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	143	151	anti-parallel
Strand 3	H	181	183	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	143	151	anti-parallel
Strand 3	H	186	188	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	97	109	anti-parallel
Strand 3	B	370	381	anti-parallel
Strand 4	B	28	38	anti-parallel
Strand 5	B	454	455	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	365	367	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	61	63	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	254	first strand
Strand 2	B	154	161	anti-parallel
Strand 3	B	328	334	anti-parallel
Strand 4	B	72	77	anti-parallel
Strand 5	B	446	449	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	146	150	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	194	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	229	232	anti-parallel
Strand 4	B	200	201	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	291	296	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	359	362	anti-parallel
Strand 3	A	266	267	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	371	381	anti-parallel
Strand 3	A	107	108	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	371	381	anti-parallel
Strand 3	A	29	38	anti-parallel
Strand 4	A	454	455	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	359	369	anti-parallel
Strand 3	A	342	347	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	359	369	anti-parallel
Strand 3	E	266	267	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	63	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	331	334	anti-parallel
Strand 4	A	72	76	anti-parallel
Strand 5	A	446	448	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	146	150	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	231	232	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	291	295	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	97	109	anti-parallel
Strand 3	C	370	381	anti-parallel
Strand 4	C	29	39	anti-parallel
Strand 5	C	454	455	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	359	367	anti-parallel
Strand 3	C	342	347	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	63	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	448	first strand
Strand 2	C	72	77	parallel
Strand 3	C	328	335	anti-parallel
Strand 4	C	154	161	anti-parallel
Strand 5	C	248	255	anti-parallel
Strand 6	D	300	301	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	194	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	229	232	anti-parallel
Strand 4	C	200	201	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	262	first strand
Strand 2	C	291	295	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	375	parallel
Strand 3	D	98	109	anti-parallel
Strand 4	D	378	380	anti-parallel
Strand 5	D	29	30	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	359	375	anti-parallel
Strand 3	D	342	347	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	359	375	anti-parallel
Strand 4	D	98	109	anti-parallel
Strand 5	D	311	312	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	98	109	anti-parallel
Strand 3	D	323	324	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	61	63	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	249	262	anti-parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	328	335	anti-parallel
Strand 5	D	72	77	anti-parallel
Strand 6	D	446	449	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	249	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	194	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	231	232	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	359	368	parallel
Strand 3	E	43	46	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	359	368	parallel
Strand 3	E	342	347	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	100	first strand
Strand 2	E	371	381	anti-parallel
Strand 3	E	103	108	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	100	first strand
Strand 2	E	371	381	anti-parallel
Strand 3	E	29	37	anti-parallel
Strand 4	E	454	455	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	61	63	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	254	first strand
Strand 2	E	154	161	anti-parallel
Strand 3	E	328	334	anti-parallel
Strand 4	E	72	77	anti-parallel
Strand 5	E	446	448	parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	125	first strand
Strand 2	E	145	151	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	257	262	anti-parallel
Strand 3	E	291	295	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	188	191	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	229	230	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNL