Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DNM entry

There are 4 chains in PDB entry 7DNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3VAL 338
B
 ALA 2LEU 135
P
 GLU 3VAL 338
Q
 ALA 2LEU 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7DNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
19 25Right-handed alpha
Helix 3
AA3
A
29 41Right-handed alpha
Helix 4
AA4
A
50 54Right-handed alpha
Helix 5
AA5
A
61 76Right-handed alpha
Helix 6
AA6
A
97 115Right-handed alpha
Helix 7
AA7
A
126 141Right-handed alpha
Helix 8
AA8
A
156 170Right-handed alpha
Helix 9
AA9
A
181 184Right-handed 310
Helix 10
AB1
A
188 198Right-handed alpha
Helix 11
AB2
A
203 213Right-handed alpha
Helix 12
AB3
A
217 232Right-handed alpha
Helix 13
AB4
A
235 240Right-handed 310
Helix 14
AB5
A
241 250Right-handed alpha
Helix 15
AB6
A
254 263Right-handed 310
Helix 16
AB7
A
285 296Right-handed alpha
Helix 17
AB8
A
308 311Right-handed 310
Helix 18
AB9
A
318 338Right-handed alpha
Helix 19
AC1
B
9 11Right-handed 310
Helix 20
AC2
B
50 54Right-handed 310
Helix 21
AC3
B
67 71Right-handed 310
Helix 22
AC4
P
4 8Right-handed 310
Helix 23
AC5
P
19 25Right-handed alpha
Helix 24
AC6
P
29 41Right-handed alpha
Helix 25
AC7
P
50 54Right-handed alpha
Helix 26
AC8
P
61 76Right-handed alpha
Helix 27
AC9
P
97 115Right-handed alpha
Helix 28
AD1
P
126 141Right-handed alpha
Helix 29
AD2
P
156 170Right-handed alpha
Helix 30
AD3
P
181 184Right-handed 310
Helix 31
AD4
P
188 198Right-handed alpha
Helix 32
AD5
P
201 213Right-handed alpha
Helix 33
AD6
P
217 231Right-handed alpha
Helix 34
AD7
P
235 240Right-handed 310
Helix 35
AD8
P
241 250Right-handed alpha
Helix 36
AD9
P
254 263Right-handed 310
Helix 37
AE1
P
285 296Right-handed alpha
Helix 38
AE2
P
308 311Right-handed 310
Helix 39
AE3
P
318 338Right-handed alpha
Helix 40
AE4
Q
9 11Right-handed 310
Helix 41
AE5
Q
50 53Right-handed 310
Helix 42
AE6
Q
67 71Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7DNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
45 49parallel
Strand 3
A
78 83parallel
Strand 4
A
119 122parallel
Strand 5
A
143 148parallel
Strand 6
A
174 179parallel
Strand 7
A
265 272parallel
Strand 8
A
300 306parallel
Strand 9
A
10 15parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
19 23anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
55 58anti-parallel
Strand 5
B
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
97 114anti-parallel
Strand 4
B
117 130anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 15first strand
Strand 2
P
45 49parallel
Strand 3
P
78 83parallel
Strand 4
P
119 122parallel
Strand 5
P
143 148parallel
Strand 6
P
174 179parallel
Strand 7
P
265 272parallel
Strand 8
P
300 306parallel
Strand 9
P
10 15parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
13 16first strand
Strand 2
Q
19 23anti-parallel
Strand 3
Q
83 87anti-parallel
Strand 4
Q
55 58anti-parallel
Strand 5
Q
61 64anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
32 33first strand
Strand 2
Q
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
47 48first strand
Strand 2
Q
37 44anti-parallel
Strand 3
Q
97 114anti-parallel
Strand 4
Q
117 130anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il