Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DNR entry

There are 2 chains in PDB entry 7DNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 244ARG 600
B
 ASP 245GLN 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7DNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 259Right-handed alpha
Helix 2
AA2
A
259 269Right-handed alpha
Helix 3
AA3
A
279 283Right-handed 310
Helix 4
AA4
A
285 293Right-handed alpha
Helix 5
AA5
A
301 318Right-handed alpha
Helix 6
AA6
A
328 332Right-handed alpha
Helix 7
AA7
A
353 364Right-handed alpha
Helix 8
AA8
A
380 385Right-handed alpha
Helix 9
AA9
A
403 424Right-handed alpha
Helix 10
AB1
A
427 450Right-handed alpha
Helix 11
AB2
A
451 460Right-handed alpha
Helix 12
AB3
A
461 463Right-handed 310
Helix 13
AB4
A
473 475Right-handed 310
Helix 14
AB5
A
476 492Right-handed alpha
Helix 15
AB6
A
501 503Right-handed 310
Helix 16
AB7
A
506 511Right-handed alpha
Helix 17
AB8
A
526 539Right-handed alpha
Helix 18
AB9
A
569 571Right-handed 310
Helix 19
AC1
A
572 593Right-handed alpha
Helix 20
AC2
B
251 259Right-handed alpha
Helix 21
AC3
B
259 269Right-handed alpha
Helix 22
AC4
B
279 283Right-handed 310
Helix 23
AC5
B
285 292Right-handed alpha
Helix 24
AC6
B
301 319Right-handed alpha
Helix 25
AC7
B
328 332Right-handed alpha
Helix 26
AC8
B
353 366Right-handed alpha
Helix 27
AC9
B
380 386Right-handed alpha
Helix 28
AD1
B
403 424Right-handed alpha
Helix 29
AD2
B
427 450Right-handed alpha
Helix 30
AD3
B
451 460Right-handed alpha
Helix 31
AD4
B
461 463Right-handed 310
Helix 32
AD5
B
473 475Right-handed 310
Helix 33
AD6
B
476 492Right-handed alpha
Helix 34
AD7
B
501 503Right-handed 310
Helix 35
AD8
B
506 511Right-handed alpha
Helix 36
AD9
B
526 540Right-handed alpha
Helix 37
AE1
B
569 571Right-handed 310
Helix 38
AE2
B
572 593Right-handed alpha
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There are 6 sheets in PDB entry 7DNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
276 277anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
295 300parallel
Strand 3
A
342 348parallel
Strand 4
A
370 375parallel
Strand 5
A
388 391parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 499first strand
Strand 2
A
467 472parallel
Strand 3
A
516 521parallel
Strand 4
A
543 549parallel
Strand 5
A
560 565parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
276 277anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 327first strand
Strand 2
B
295 300parallel
Strand 3
B
342 348parallel
Strand 4
B
370 375parallel
Strand 5
B
388 391parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 499first strand
Strand 2
B
467 472parallel
Strand 3
B
516 521parallel
Strand 4
B
543 549parallel
Strand 5
B
560 565parallel
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