Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DNU entry

There is 1 chain in PDB entry 7DNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2TYR 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 7DNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 43Right-handed alpha
Helix 2
AA2
A
51 61Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
74 84Right-handed alpha
Helix 5
AA5
A
88 104Right-handed alpha
Helix 6
AA6
A
109 119Right-handed alpha
Helix 7
AA7
A
139 153Right-handed alpha
Helix 8
AA8
A
155 157Right-handed 310
Helix 9
AA9
A
193 198Right-handed 310
Helix 10
AB1
A
202 207Right-handed alpha
Helix 11
AB2
A
217 225Right-handed alpha
Helix 12
AB3
A
231 247Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7DNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
24 32anti-parallel
Strand 3
A
6 19anti-parallel
Strand 4
A
131 132anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 216first strand
Strand 2
A
24 32anti-parallel
Strand 3
A
6 19anti-parallel
Strand 4
A
176 187parallel
Strand 5
A
159 161anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
176 187anti-parallel
Strand 3
A
167 172anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il