Analysis of interatomic Contacts of Structural Units in PDB entry:
7DNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DNY entry

There are 2 chains in PDB entry 7DNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 258GLN 828
B
 TRP 254GLN 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7DNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
258 295Right-handed alpha
Helix 2
AA2
A
298 317Right-handed alpha
Helix 3
AA3
A
324 334Right-handed alpha
Helix 4
AA4
A
334 355Right-handed alpha
Helix 5
AA5
A
357 363Right-handed alpha
Helix 6
AA6
A
365 390Right-handed alpha
Helix 7
AA7
A
390 408Right-handed alpha
Helix 8
AA8
A
410 459Right-handed alpha
Helix 9
AA9
A
459 467Right-handed alpha
Helix 10
AB1
A
468 522Right-handed alpha
Helix 11
AB2
A
526 570Right-handed alpha
Helix 12
AB3
A
629 637Right-handed alpha
Helix 13
AB4
A
658 664Right-handed alpha
Helix 14
AB5
A
680 688Right-handed alpha
Helix 15
AB6
A
692 703Right-handed alpha
Helix 16
AB7
A
705 712Right-handed alpha
Helix 17
AB8
A
714 718Right-handed 310
Helix 18
AB9
A
728 744Right-handed alpha
Helix 19
AC1
A
758 773Right-handed alpha
Helix 20
AC2
A
785 790Right-handed alpha
Helix 21
AC3
A
807 815Right-handed alpha
Helix 22
AC4
A
816 827Right-handed alpha
Helix 23
AC5
B
258 295Right-handed alpha
Helix 24
AC6
B
298 316Right-handed alpha
Helix 25
AC7
B
324 356Right-handed alpha
Helix 26
AC8
B
357 362Right-handed alpha
Helix 27
AC9
B
366 408Right-handed alpha
Helix 28
AD1
B
410 459Right-handed alpha
Helix 29
AD2
B
459 466Right-handed alpha
Helix 30
AD3
B
468 522Right-handed alpha
Helix 31
AD4
B
526 542Right-handed alpha
Helix 32
AD5
B
543 553Right-handed alpha
Helix 33
AD6
B
553 570Right-handed alpha
Helix 34
AD7
B
627 637Right-handed alpha
Helix 35
AD8
B
658 666Right-handed alpha
Helix 36
AD9
B
680 685Right-handed alpha
Helix 37
AE1
B
686 688Right-handed 310
Helix 38
AE2
B
692 704Right-handed alpha
Helix 39
AE3
B
705 712Right-handed alpha
Helix 40
AE4
B
714 718Right-handed 310
Helix 41
AE5
B
728 744Right-handed alpha
Helix 42
AE6
B
758 774Right-handed alpha
Helix 43
AE7
B
784 790Right-handed alpha
Helix 44
AE8
B
807 815Right-handed alpha
Helix 45
AE9
B
816 827Right-handed alpha
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There are 8 sheets in PDB entry 7DNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
611 613anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 621first strand
Strand 2
A
779 781parallel
Strand 3
A
750 751parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 667first strand
Strand 2
A
747 748parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
795 798first strand
Strand 2
A
801 805anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
595 597first strand
Strand 2
B
606 609anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 620first strand
Strand 2
B
793 794parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
796 798first strand
Strand 2
B
801 804anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il