Analysis of interatomic Contacts of Structural Units in PDB entry:
7DO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DO5 entry

There are 8 chains in PDB entry 7DO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 256
B	HIS -4	GLN 256
C	SER 1	GLN 256
D	GLY 0	GLN 256
E	GLY 0	GLN 256
F	GLY 0	GLN 256
G	ARG -9	GLN 256
H	HIS -1	GLN 256

There are 88 helices in PDB entry 7DO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	71	85	Right-handed alpha
Helix 4	AA4	A	106	118	Right-handed alpha
Helix 5	AA5	A	118	136	Right-handed alpha
Helix 6	AA6	A	146	150	Right-handed 310
Helix 7	AA7	A	159	178	Right-handed alpha
Helix 8	AA8	A	199	202	Right-handed 310
Helix 9	AA9	A	203	213	Right-handed alpha
Helix 10	AB1	A	222	234	Right-handed alpha
Helix 11	AB2	A	235	238	Right-handed 310
Helix 12	AB3	B	15	28	Right-handed alpha
Helix 13	AB4	B	39	56	Right-handed alpha
Helix 14	AB5	B	71	85	Right-handed alpha
Helix 15	AB6	B	106	118	Right-handed alpha
Helix 16	AB7	B	118	136	Right-handed alpha
Helix 17	AB8	B	146	150	Right-handed 310
Helix 18	AB9	B	153	157	Right-handed 310
Helix 19	AC1	B	159	178	Right-handed alpha
Helix 20	AC2	B	197	203	Right-handed alpha
Helix 21	AC3	B	203	213	Right-handed alpha
Helix 22	AC4	B	222	234	Right-handed alpha
Helix 23	AC5	B	235	238	Right-handed 310
Helix 24	AC6	C	15	28	Right-handed alpha
Helix 25	AC7	C	39	56	Right-handed alpha
Helix 26	AC8	C	71	85	Right-handed alpha
Helix 27	AC9	C	106	118	Right-handed alpha
Helix 28	AD1	C	118	136	Right-handed alpha
Helix 29	AD2	C	146	150	Right-handed 310
Helix 30	AD3	C	159	178	Right-handed alpha
Helix 31	AD4	C	199	202	Right-handed 310
Helix 32	AD5	C	203	213	Right-handed alpha
Helix 33	AD6	C	222	234	Right-handed alpha
Helix 34	AD7	C	235	238	Right-handed 310
Helix 35	AD8	D	15	28	Right-handed alpha
Helix 36	AD9	D	39	56	Right-handed alpha
Helix 37	AE1	D	71	85	Right-handed alpha
Helix 38	AE2	D	106	118	Right-handed alpha
Helix 39	AE3	D	118	136	Right-handed alpha
Helix 40	AE4	D	146	150	Right-handed 310
Helix 41	AE5	D	159	178	Right-handed alpha
Helix 42	AE6	D	195	199	Right-handed 310
Helix 43	AE7	D	200	213	Right-handed alpha
Helix 44	AE8	D	222	234	Right-handed alpha
Helix 45	AE9	D	235	238	Right-handed 310
Helix 46	AF1	E	15	28	Right-handed alpha
Helix 47	AF2	E	39	56	Right-handed alpha
Helix 48	AF3	E	71	85	Right-handed alpha
Helix 49	AF4	E	106	118	Right-handed alpha
Helix 50	AF5	E	118	136	Right-handed alpha
Helix 51	AF6	E	146	150	Right-handed 310
Helix 52	AF7	E	159	178	Right-handed alpha
Helix 53	AF8	E	204	213	Right-handed alpha
Helix 54	AF9	E	221	224	Right-handed 310
Helix 55	AG1	E	225	234	Right-handed alpha
Helix 56	AG2	E	235	238	Right-handed 310
Helix 57	AG3	F	15	28	Right-handed alpha
Helix 58	AG4	F	39	56	Right-handed alpha
Helix 59	AG5	F	71	85	Right-handed alpha
Helix 60	AG6	F	106	118	Right-handed alpha
Helix 61	AG7	F	118	136	Right-handed alpha
Helix 62	AG8	F	146	150	Right-handed 310
Helix 63	AG9	F	159	178	Right-handed alpha
Helix 64	AH1	F	197	202	Right-handed alpha
Helix 65	AH2	F	203	213	Right-handed alpha
Helix 66	AH3	F	222	234	Right-handed alpha
Helix 67	AH4	F	235	238	Right-handed 310
Helix 68	AH5	G	15	28	Right-handed alpha
Helix 69	AH6	G	39	56	Right-handed alpha
Helix 70	AH7	G	71	85	Right-handed alpha
Helix 71	AH8	G	106	118	Right-handed alpha
Helix 72	AH9	G	118	136	Right-handed alpha
Helix 73	AI1	G	146	150	Right-handed 310
Helix 74	AI2	G	159	178	Right-handed alpha
Helix 75	AI3	G	197	203	Right-handed alpha
Helix 76	AI4	G	203	213	Right-handed alpha
Helix 77	AI5	G	222	234	Right-handed alpha
Helix 78	AI6	G	235	238	Right-handed 310
Helix 79	AI7	H	15	28	Right-handed alpha
Helix 80	AI8	H	39	56	Right-handed alpha
Helix 81	AI9	H	71	85	Right-handed alpha
Helix 82	AJ1	H	106	118	Right-handed alpha
Helix 83	AJ2	H	118	136	Right-handed alpha
Helix 84	AJ3	H	146	150	Right-handed 310
Helix 85	AJ4	H	159	178	Right-handed alpha
Helix 86	AJ5	H	203	213	Right-handed alpha
Helix 87	AJ6	H	222	234	Right-handed alpha
Helix 88	AJ7	H	235	238	Right-handed 310

There are 8 sheets in PDB entry 7DO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	31	36	parallel
Strand 3	A	7	10	parallel
Strand 4	A	89	92	parallel
Strand 5	A	139	144	parallel
Strand 6	A	182	189	parallel
Strand 7	A	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	31	36	parallel
Strand 3	B	7	10	parallel
Strand 4	B	89	92	parallel
Strand 5	B	139	144	parallel
Strand 6	B	182	189	parallel
Strand 7	B	243	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	31	36	parallel
Strand 3	C	7	10	parallel
Strand 4	C	89	92	parallel
Strand 5	C	139	144	parallel
Strand 6	C	182	189	parallel
Strand 7	C	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	31	36	parallel
Strand 3	D	7	10	parallel
Strand 4	D	89	92	parallel
Strand 5	D	139	144	parallel
Strand 6	D	182	189	parallel
Strand 7	D	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	64	first strand
Strand 2	E	31	36	parallel
Strand 3	E	7	10	parallel
Strand 4	E	89	92	parallel
Strand 5	E	139	144	parallel
Strand 6	E	182	189	parallel
Strand 7	E	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	64	first strand
Strand 2	F	31	36	parallel
Strand 3	F	7	10	parallel
Strand 4	F	89	92	parallel
Strand 5	F	139	144	parallel
Strand 6	F	182	189	parallel
Strand 7	F	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	64	first strand
Strand 2	G	31	36	parallel
Strand 3	G	7	10	parallel
Strand 4	G	89	92	parallel
Strand 5	G	139	144	parallel
Strand 6	G	182	189	parallel
Strand 7	G	244	247	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	64	first strand
Strand 2	H	31	36	parallel
Strand 3	H	7	10	parallel
Strand 4	H	89	92	parallel
Strand 5	H	139	144	parallel
Strand 6	H	182	189	parallel
Strand 7	H	244	247	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DO5