Analysis of interatomic Contacts of Structural Units in PDB entry:
7DOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DOD entry

There are 3 chains in PDB entry 7DOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 21	ASN 554
A	PRO 38	ASN 554
B	ASP 21	ASN 554

There are 21 helices in PDB entry 7DOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	42	55	Right-handed alpha
Helix 2	AA2	C	62	68	Right-handed alpha
Helix 3	AA3	C	93	96	Right-handed 310
Helix 4	AA4	C	97	104	Right-handed alpha
Helix 5	AA5	C	105	107	Right-handed 310
Helix 6	AA6	C	140	144	Right-handed 310
Helix 7	AA7	C	236	241	Right-handed 310
Helix 8	AA8	C	479	489	Right-handed alpha
Helix 9	AA9	A	42	54	Right-handed alpha
Helix 10	AB1	A	93	96	Right-handed 310
Helix 11	AB2	A	97	104	Right-handed alpha
Helix 12	AB3	A	105	107	Right-handed 310
Helix 13	AB4	A	140	144	Right-handed 310
Helix 14	AB5	A	236	241	Right-handed 310
Helix 15	AB6	A	479	489	Right-handed alpha
Helix 16	AB7	B	42	55	Right-handed alpha
Helix 17	AB8	B	93	96	Right-handed 310
Helix 18	AB9	B	97	104	Right-handed alpha
Helix 19	AC1	B	140	144	Right-handed 310
Helix 20	AC2	B	236	241	Right-handed 310
Helix 21	AC3	B	479	489	Right-handed alpha

There are 23 sheets in PDB entry 7DOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	77	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	114	121	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	91	first strand
Strand 2	C	186	196	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	152	156	anti-parallel
Strand 5	B	25	26	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	109	111	anti-parallel
Strand 3	C	220	221	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	476	first strand
Strand 2	C	456	461	anti-parallel
Strand 3	C	259	263	anti-parallel
Strand 4	C	529	531	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	476	first strand
Strand 2	C	456	461	anti-parallel
Strand 3	C	520	522	anti-parallel
Strand 4	C	509	514	anti-parallel
Strand 5	C	497	504	anti-parallel
Strand 6	C	537	545	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	449	450	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	466	first strand
Strand 2	C	426	428	parallel
Strand 3	C	348	356	anti-parallel
Strand 4	C	419	422	anti-parallel
Strand 5	C	290	298	anti-parallel
Strand 6	C	307	310	anti-parallel
Strand 7	C	398	402	anti-parallel
Strand 8	C	369	374	anti-parallel
Strand 9	C	348	356	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	77	first strand
Strand 2	A	207	215	anti-parallel
Strand 3	A	114	121	anti-parallel
Strand 4	A	163	167	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	91	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	130	135	anti-parallel
Strand 4	A	152	154	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	220	221	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	263	first strand
Strand 2	A	456	463	anti-parallel
Strand 3	A	475	476	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	263	first strand
Strand 2	A	456	463	anti-parallel
Strand 3	A	520	522	anti-parallel
Strand 4	A	509	514	anti-parallel
Strand 5	A	497	504	anti-parallel
Strand 6	A	537	545	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	449	450	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	349	356	anti-parallel
Strand 4	A	369	374	anti-parallel
Strand 5	A	398	402	anti-parallel
Strand 6	A	307	309	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	465	466	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	77	first strand
Strand 2	B	207	221	anti-parallel
Strand 3	B	109	120	anti-parallel
Strand 4	B	163	167	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	77	first strand
Strand 2	B	207	221	anti-parallel
Strand 3	B	109	120	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	91	first strand
Strand 2	B	186	196	anti-parallel
Strand 3	B	127	135	anti-parallel
Strand 4	B	152	156	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	456	461	anti-parallel
Strand 3	B	259	262	anti-parallel
Strand 4	B	530	531	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	456	461	anti-parallel
Strand 3	B	520	522	anti-parallel
Strand 4	B	509	514	anti-parallel
Strand 5	B	497	504	anti-parallel
Strand 6	B	537	545	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	449	450	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	298	first strand
Strand 2	B	307	310	anti-parallel
Strand 3	B	398	402	anti-parallel
Strand 4	B	369	374	anti-parallel
Strand 5	B	350	354	anti-parallel
Strand 6	B	419	422	anti-parallel
Strand 7	B	290	298	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	465	466	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DOD