Analysis of interatomic Contacts of Structural Units in PDB entry:
7DOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DOG entry

There are 2 chains in PDB entry 7DOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ASN 318
B
 ALA 1GLU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7DOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 39Right-handed alpha
Helix 2
AA2
A
56 72Right-handed alpha
Helix 3
AA3
A
87 93Right-handed alpha
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
108 114Right-handed 310
Helix 6
AA6
A
130 138Right-handed alpha
Helix 7
AA7
A
145 158Right-handed alpha
Helix 8
AA8
A
196 201Right-handed 310
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
271 277Right-handed alpha
Helix 11
AB2
A
302 310Right-handed alpha
Helix 12
AB3
B
20 38Right-handed alpha
Helix 13
AB4
B
56 72Right-handed alpha
Helix 14
AB5
B
87 92Right-handed alpha
Helix 15
AB6
B
94 99Right-handed alpha
Helix 16
AB7
B
108 114Right-handed 310
Helix 17
AB8
B
130 139Right-handed alpha
Helix 18
AB9
B
145 158Right-handed alpha
Helix 19
AC1
B
232 236Right-handed 310
Helix 20
AC2
B
271 277Right-handed alpha
Helix 21
AC3
B
301 310Right-handed alpha
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There are 10 sheets in PDB entry 7DOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
78 81parallel
Strand 3
A
42 46parallel
Strand 4
A
1 6parallel
Strand 5
A
240 248anti-parallel
Strand 6
A
251 259anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
18 19anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
166 171parallel
Strand 4
A
205 208parallel
Strand 5
A
222 224parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
194 195parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
288 293parallel
Strand 3
A
313 317parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
78 81parallel
Strand 3
B
42 46parallel
Strand 4
B
2 6parallel
Strand 5
B
241 248anti-parallel
Strand 6
B
251 258anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
18 19anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
121 126anti-parallel
Strand 3
B
166 171parallel
Strand 4
B
205 208parallel
Strand 5
B
222 224parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
194 195parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
288 293parallel
Strand 3
B
313 318parallel
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