Analysis of interatomic Contacts of Structural Units in PDB entry:
7DOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DOX entry

There are 2 chains in PDB entry 7DOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29TYR 185
D
 SER 29TYR 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7DOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 47Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
80 94Right-handed alpha
Helix 4
AA4
A
110 121Right-handed alpha
Helix 5
AA5
A
130 136Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
164 178Right-handed alpha
Helix 8
AA8
D
30 48Right-handed alpha
Helix 9
AA9
D
70 75Right-handed alpha
Helix 10
AB1
D
80 94Right-handed alpha
Helix 11
AB2
D
110 121Right-handed alpha
Helix 12
AB3
D
130 136Right-handed alpha
Helix 13
AB4
D
144 149Right-handed alpha
Helix 14
AB5
D
164 179Right-handed alpha
Helix 15
AB6
D
180 182Right-handed 310
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There are 2 sheets in PDB entry 7DOX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
124 129parallel
Strand 5
A
159 162parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 68first strand
Strand 2
D
54 59anti-parallel
Strand 3
D
101 107anti-parallel
Strand 4
D
124 129parallel
Strand 5
D
159 162parallel
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