Analysis of interatomic Contacts of Structural Units in PDB entry:
7DP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DP2 entry

There are 2 chains in PDB entry 7DP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9PHE 231
B
 LEU 9PHE 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7DP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
30 42Right-handed alpha
Helix 3
AA3
A
46 50Right-handed 310
Helix 4
AA4
A
60 75Right-handed alpha
Helix 5
AA5
A
76 81Right-handed 310
Helix 6
AA6
A
93 112Right-handed alpha
Helix 7
AA7
A
117 127Right-handed alpha
Helix 8
AA8
A
128 134Right-handed 310
Helix 9
AA9
A
147 168Right-handed alpha
Helix 10
AB1
A
176 180Right-handed 310
Helix 11
AB2
A
181 190Right-handed alpha
Helix 12
AB3
A
210 214Right-handed 310
Helix 13
AB4
A
221 224Right-handed 310
Helix 14
AB5
B
10 18Right-handed alpha
Helix 15
AB6
B
30 42Right-handed alpha
Helix 16
AB7
B
46 50Right-handed 310
Helix 17
AB8
B
59 75Right-handed alpha
Helix 18
AB9
B
76 81Right-handed 310
Helix 19
AC1
B
93 112Right-handed alpha
Helix 20
AC2
B
121 127Right-handed alpha
Helix 21
AC3
B
128 134Right-handed 310
Helix 22
AC4
B
147 168Right-handed alpha
Helix 23
AC5
B
176 180Right-handed 310
Helix 24
AC6
B
181 190Right-handed alpha
Helix 25
AC7
B
210 214Right-handed 310
Helix 26
AC8
B
221 224Right-handed 310
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There are 2 sheets in PDB entry 7DP2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
195 204anti-parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
B
226 229parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
B
54 58parallel
Strand 3
B
136 143anti-parallel
Strand 4
B
195 204anti-parallel
Strand 5
B
171 175anti-parallel
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