Analysis of interatomic Contacts of Structural Units in PDB entry:
7DP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DP3 entry

There are 2 chains in PDB entry 7DP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 74LYS 366
B
 PRO 74SER 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 7DP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
91 106Right-handed alpha
Helix 3
AA3
A
107 110Right-handed 310
Helix 4
AA4
A
111 119Right-handed alpha
Helix 5
AA5
A
125 129Right-handed alpha
Helix 6
AA6
A
140 148Right-handed alpha
Helix 7
AA7
A
148 178Right-handed alpha
Helix 8
AA8
A
206 210Right-handed 310
Helix 9
AA9
A
211 215Right-handed 310
Helix 10
AB1
A
318 320Right-handed 310
Helix 11
AB2
B
77 81Right-handed 310
Helix 12
AB3
B
91 106Right-handed alpha
Helix 13
AB4
B
111 119Right-handed alpha
Helix 14
AB5
B
125 130Right-handed alpha
Helix 15
AB6
B
140 148Right-handed alpha
Helix 16
AB7
B
148 175Right-handed alpha
Helix 17
AB8
B
318 320Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7DP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
195 199parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
285 295anti-parallel
Strand 3
A
310 316anti-parallel
Strand 4
A
355 364parallel
Strand 5
A
328 337anti-parallel
Strand 6
A
218 228anti-parallel
Strand 7
A
285 295anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
237 242anti-parallel
Strand 3
A
274 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
195 199parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
285 294anti-parallel
Strand 3
B
310 316anti-parallel
Strand 4
B
353 364parallel
Strand 5
B
328 339anti-parallel
Strand 6
B
218 228anti-parallel
Strand 7
B
285 294anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
237 242anti-parallel
Strand 3
B
274 276anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il