Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DPA entry

There are 6 chains in PDB entry 7DPA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 1642
B	MET 1	LEU 177
C	SER 530	ASN 727
D	MET 1	LEU 1642
E	MET 1	LEU 177
F	SER 530	ASN 727

There are154 helices in PDB entry 7DPA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	105	Right-handed alpha
Helix 2	AA2	A	110	133	Right-handed alpha
Helix 3	AA3	A	137	159	Right-handed alpha
Helix 4	AA4	A	180	208	Right-handed alpha
Helix 5	AA5	A	296	300	Right-handed 310
Helix 6	AA6	A	327	337	Right-handed alpha
Helix 7	AA7	A	354	364	Right-handed alpha
Helix 8	AA8	A	376	387	Right-handed alpha
Helix 9	AA9	A	390	395	Right-handed alpha
Helix 10	AB1	A	404	412	Right-handed alpha
Helix 11	AB2	A	420	429	Right-handed alpha
Helix 12	AB3	A	491	495	Right-handed 310
Helix 13	AB4	A	518	524	Right-handed alpha
Helix 14	AB5	A	575	579	Right-handed 310
Helix 15	AB6	A	582	587	Right-handed alpha
Helix 16	AB7	A	591	597	Right-handed alpha
Helix 17	AB8	A	635	641	Right-handed alpha
Helix 18	AB9	A	663	676	Right-handed alpha
Helix 19	AC1	A	678	704	Right-handed alpha
Helix 20	AC2	A	706	713	Right-handed alpha
Helix 21	AC3	A	714	721	Right-handed alpha
Helix 22	AC4	A	727	740	Right-handed alpha
Helix 23	AC5	A	745	751	Right-handed alpha
Helix 24	AC6	A	756	769	Right-handed alpha
Helix 25	AC7	A	769	777	Right-handed alpha
Helix 26	AC8	A	778	781	Right-handed 310
Helix 27	AC9	A	785	804	Right-handed alpha
Helix 28	AD1	A	811	818	Right-handed alpha
Helix 29	AD2	A	819	826	Right-handed alpha
Helix 30	AD3	A	831	846	Right-handed alpha
Helix 31	AD4	A	854	866	Right-handed alpha
Helix 32	AD5	A	870	891	Right-handed alpha
Helix 33	AD6	A	894	915	Right-handed alpha
Helix 34	AD7	A	921	943	Right-handed alpha
Helix 35	AD8	A	949	964	Right-handed alpha
Helix 36	AD9	A	965	970	Right-handed alpha
Helix 37	AE1	A	979	998	Right-handed alpha
Helix 38	AE2	A	1006	1032	Right-handed alpha
Helix 39	AE3	A	1041	1055	Right-handed alpha
Helix 40	AE4	A	1058	1064	Right-handed alpha
Helix 41	AE5	A	1067	1075	Right-handed alpha
Helix 42	AE6	A	1078	1094	Right-handed alpha
Helix 43	AE7	A	1095	1099	Right-handed 310
Helix 44	AE8	A	1105	1114	Right-handed alpha
Helix 45	AE9	A	1117	1125	Right-handed alpha
Helix 46	AF1	A	1126	1137	Right-handed alpha
Helix 47	AF2	A	1138	1142	Right-handed 310
Helix 48	AF3	A	1144	1162	Right-handed alpha
Helix 49	AF4	A	1165	1180	Right-handed alpha
Helix 50	AF5	A	1184	1215	Right-handed alpha
Helix 51	AF6	A	1216	1235	Right-handed alpha
Helix 52	AF7	A	1236	1255	Right-handed alpha
Helix 53	AF8	A	1256	1269	Right-handed alpha
Helix 54	AF9	A	1279	1283	Right-handed 310
Helix 55	AG1	A	1292	1311	Right-handed alpha
Helix 56	AG2	A	1313	1332	Right-handed alpha
Helix 57	AG3	A	1334	1355	Right-handed alpha
Helix 58	AG4	A	1390	1401	Right-handed alpha
Helix 59	AG5	A	1447	1455	Right-handed alpha
Helix 60	AG6	A	1513	1538	Right-handed alpha
Helix 61	AG7	A	1544	1556	Right-handed alpha
Helix 62	AG8	A	1561	1570	Right-handed alpha
Helix 63	AG9	A	1572	1579	Right-handed alpha
Helix 64	AH1	A	1584	1611	Right-handed alpha
Helix 65	AH2	A	1615	1635	Right-handed alpha
Helix 66	AH3	B	15	25	Right-handed alpha
Helix 67	AH4	B	62	67	Right-handed 310
Helix 68	AH5	B	86	96	Right-handed alpha
Helix 69	AH6	B	98	105	Right-handed alpha
Helix 70	AH7	B	122	132	Right-handed alpha
Helix 71	AH8	B	138	150	Right-handed alpha
Helix 72	AH9	B	164	174	Right-handed alpha
Helix 73	AI1	C	531	540	Right-handed alpha
Helix 74	AI2	C	541	559	Right-handed alpha
Helix 75	AI3	C	637	640	Right-handed 310
Helix 76	AI4	C	658	672	Right-handed alpha
Helix 77	AI5	C	679	696	Right-handed alpha
Helix 78	AI6	D	84	105	Right-handed alpha
Helix 79	AI7	D	110	133	Right-handed alpha
Helix 80	AI8	D	137	159	Right-handed alpha
Helix 81	AI9	D	180	208	Right-handed alpha
Helix 82	AJ1	D	296	300	Right-handed 310
Helix 83	AJ2	D	327	337	Right-handed alpha
Helix 84	AJ3	D	354	364	Right-handed alpha
Helix 85	AJ4	D	376	387	Right-handed alpha
Helix 86	AJ5	D	390	395	Right-handed alpha
Helix 87	AJ6	D	404	412	Right-handed alpha
Helix 88	AJ7	D	420	429	Right-handed alpha
Helix 89	AJ8	D	491	495	Right-handed 310
Helix 90	AJ9	D	518	524	Right-handed alpha
Helix 91	AK1	D	575	579	Right-handed 310
Helix 92	AK2	D	582	587	Right-handed alpha
Helix 93	AK3	D	591	597	Right-handed alpha
Helix 94	AK4	D	635	641	Right-handed alpha
Helix 95	AK5	D	663	676	Right-handed alpha
Helix 96	AK6	D	678	704	Right-handed alpha
Helix 97	AK7	D	706	713	Right-handed alpha
Helix 98	AK8	D	714	721	Right-handed alpha
Helix 99	AK9	D	727	740	Right-handed alpha
Helix 100	AL1	D	745	751	Right-handed alpha
Helix 101	AL2	D	756	769	Right-handed alpha
Helix 102	AL3	D	769	777	Right-handed alpha
Helix 103	AL4	D	778	781	Right-handed 310
Helix 104	AL5	D	785	804	Right-handed alpha
Helix 105	AL6	D	811	818	Right-handed alpha
Helix 106	AL7	D	819	826	Right-handed alpha
Helix 107	AL8	D	831	846	Right-handed alpha
Helix 108	AL9	D	854	866	Right-handed alpha
Helix 109	AM1	D	870	891	Right-handed alpha
Helix 110	AM2	D	894	915	Right-handed alpha
Helix 111	AM3	D	921	943	Right-handed alpha
Helix 112	AM4	D	949	964	Right-handed alpha
Helix 113	AM5	D	965	970	Right-handed alpha
Helix 114	AM6	D	979	998	Right-handed alpha
Helix 115	AM7	D	1006	1032	Right-handed alpha
Helix 116	AM8	D	1041	1055	Right-handed alpha
Helix 117	AM9	D	1058	1064	Right-handed alpha
Helix 118	AN1	D	1067	1075	Right-handed alpha
Helix 119	AN2	D	1078	1094	Right-handed alpha
Helix 120	AN3	D	1095	1099	Right-handed 310
Helix 121	AN4	D	1105	1114	Right-handed alpha
Helix 122	AN5	D	1117	1125	Right-handed alpha
Helix 123	AN6	D	1126	1137	Right-handed alpha
Helix 124	AN7	D	1138	1142	Right-handed 310
Helix 125	AN8	D	1144	1162	Right-handed alpha
Helix 126	AN9	D	1165	1180	Right-handed alpha
Helix 127	AO1	D	1184	1215	Right-handed alpha
Helix 128	AO2	D	1216	1235	Right-handed alpha
Helix 129	AO3	D	1236	1255	Right-handed alpha
Helix 130	AO4	D	1256	1269	Right-handed alpha
Helix 131	AO5	D	1279	1283	Right-handed 310
Helix 132	AO6	D	1292	1311	Right-handed alpha
Helix 133	AO7	D	1313	1332	Right-handed alpha
Helix 134	AO8	D	1334	1355	Right-handed alpha
Helix 135	AO9	D	1390	1401	Right-handed alpha
Helix 136	AP1	D	1447	1455	Right-handed alpha
Helix 137	AP2	D	1513	1538	Right-handed alpha
Helix 138	AP3	D	1544	1556	Right-handed alpha
Helix 139	AP4	D	1561	1570	Right-handed alpha
Helix 140	AP5	D	1572	1579	Right-handed alpha
Helix 141	AP6	D	1584	1611	Right-handed alpha
Helix 142	AP7	D	1615	1635	Right-handed alpha
Helix 143	AP8	E	15	25	Right-handed alpha
Helix 144	AP9	E	62	67	Right-handed 310
Helix 145	AQ1	E	86	96	Right-handed alpha
Helix 146	AQ2	E	98	105	Right-handed alpha
Helix 147	AQ3	E	122	132	Right-handed alpha
Helix 148	AQ4	E	138	150	Right-handed alpha
Helix 149	AQ5	E	164	174	Right-handed alpha
Helix 150	AQ6	F	531	540	Right-handed alpha
Helix 151	AQ7	F	541	559	Right-handed alpha
Helix 152	AQ8	F	637	640	Right-handed 310
Helix 153	AQ9	F	658	672	Right-handed alpha
Helix 154	AR1	F	679	696	Right-handed alpha

There are 24 sheets in PDB entry 7DPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	44	49	anti-parallel
Strand 3	A	58	60	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	234	first strand
Strand 2	A	239	246	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	258	264	anti-parallel
Strand 3	A	303	309	anti-parallel
Strand 4	A	317	319	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	474	first strand
Strand 2	A	525	530	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	572	573	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1362	1363	first strand
Strand 2	A	1430	1433	anti-parallel
Strand 3	A	1459	1463	anti-parallel
Strand 4	A	1487	1495	anti-parallel
Strand 5	A	1506	1509	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1365	1366	first strand
Strand 2	A	1380	1381	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1467	1469	first strand
Strand 2	A	1482	1484	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	52	53	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	7	9	parallel
Strand 3	B	78	83	parallel
Strand 4	B	110	115	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	579	first strand
Strand 2	C	586	589	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	618	first strand
Strand 2	C	642	646	anti-parallel
Strand 3	C	650	654	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	58	60	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	234	first strand
Strand 2	D	239	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	272	first strand
Strand 2	D	258	264	anti-parallel
Strand 3	D	303	309	anti-parallel
Strand 4	D	317	319	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	474	first strand
Strand 2	D	525	530	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	549	first strand
Strand 2	D	572	573	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1362	1363	first strand
Strand 2	D	1430	1433	anti-parallel
Strand 3	D	1459	1463	anti-parallel
Strand 4	D	1487	1495	anti-parallel
Strand 5	D	1506	1509	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1365	1366	first strand
Strand 2	D	1380	1381	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1467	1469	first strand
Strand 2	D	1482	1484	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	52	53	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	7	9	parallel
Strand 3	E	78	83	parallel
Strand 4	E	110	115	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	576	579	first strand
Strand 2	F	586	589	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	616	618	first strand
Strand 2	F	642	646	anti-parallel
Strand 3	F	650	654	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DPA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPA