Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DPD entry

There are 2 chains in PDB entry 7DPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ASN 271
B
 SER 0ASN 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7DPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 21Right-handed alpha
Helix 2
AA2
A
21 31Right-handed alpha
Helix 3
AA3
A
44 51Right-handed alpha
Helix 4
AA4
A
51 61Right-handed alpha
Helix 5
AA5
A
61 83Right-handed alpha
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
116 120Right-handed 310
Helix 8
AA8
A
227 229Right-handed 310
Helix 9
AA9
B
2 21Right-handed alpha
Helix 10
AB1
B
21 31Right-handed alpha
Helix 11
AB2
B
44 51Right-handed alpha
Helix 12
AB3
B
51 61Right-handed alpha
Helix 13
AB4
B
61 83Right-handed alpha
Helix 14
AB5
B
86 90Right-handed 310
Helix 15
AB6
B
116 120Right-handed 310
Helix 16
AB7
B
187 190Right-handed 310
Helix 17
AB8
B
227 229Right-handed 310
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There are 8 sheets in PDB entry 7DPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
96 101parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
123 133parallel
Strand 3
A
196 205anti-parallel
Strand 4
A
137 140anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
123 133parallel
Strand 3
A
237 249anti-parallel
Strand 4
A
258 270anti-parallel
Strand 5
A
219 225parallel
Strand 6
A
196 205anti-parallel
Strand 7
A
137 140anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
183 185anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 43first strand
Strand 2
B
96 101parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
123 133parallel
Strand 3
B
196 206anti-parallel
Strand 4
B
137 140anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
123 133parallel
Strand 3
B
237 249anti-parallel
Strand 4
B
258 270anti-parallel
Strand 5
B
219 225parallel
Strand 6
B
196 206anti-parallel
Strand 7
B
137 140anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
183 185anti-parallel
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