Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DPE entry

There are 2 chains in PDB entry 7DPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1 C 18
A
 LYS 3PHE 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7DPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
90 106Right-handed alpha
Helix 5
AA5
A
139 146Right-handed alpha
Helix 6
AA6
A
148 151Right-handed 310
Helix 7
AA7
A
211 219Right-handed 310
Helix 8
AA8
A
251 258Right-handed 310
Helix 9
AA9
A
259 264Right-handed alpha
Helix 10
AB1
A
278 288Right-handed alpha
Helix 11
AB2
A
288 293Right-handed alpha
Helix 12
AB3
A
367 372Right-handed alpha
Helix 13
AB4
A
373 375Right-handed 310
Helix 14
AB5
A
403 407Right-handed 310
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There are 2 sheets in PDB entry 7DPE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
352 356parallel
Strand 4
A
296 305parallel
Strand 5
A
324 332anti-parallel
Strand 6
A
269 275anti-parallel
Strand 7
A
229 232parallel
Strand 8
A
383 386parallel
Strand 9
A
395 399parallel
Strand 10
A
205 209parallel
Strand 11
A
182 184anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
190 194anti-parallel
Strand 4
A
197 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il