Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DPI entry

There are 4 chains in PDB entry 7DPI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 277	LYS 572
C	ASN 278	SER 573
B	ILE 4	THR 616
D	PRO 2	LYS 379

There are 53 helices in PDB entry 7DPI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	310	327	Right-handed alpha
Helix 2	AA2	A	339	344	Right-handed alpha
Helix 3	AA3	A	345	348	Right-handed 310
Helix 4	AA4	A	375	380	Right-handed alpha
Helix 5	AA5	A	380	389	Right-handed alpha
Helix 6	AA6	A	403	408	Right-handed alpha
Helix 7	AA7	A	415	434	Right-handed alpha
Helix 8	AA8	A	474	489	Right-handed alpha
Helix 9	AA9	A	530	535	Right-handed alpha
Helix 10	AB1	A	536	538	Right-handed 310
Helix 11	AB2	A	552	560	Right-handed alpha
Helix 12	AB3	C	310	327	Right-handed alpha
Helix 13	AB4	C	340	344	Right-handed alpha
Helix 14	AB5	C	379	387	Right-handed alpha
Helix 15	AB6	C	403	408	Right-handed alpha
Helix 16	AB7	C	415	433	Right-handed alpha
Helix 17	AB8	C	474	489	Right-handed alpha
Helix 18	AB9	C	530	535	Right-handed alpha
Helix 19	AC1	C	536	538	Right-handed 310
Helix 20	AC2	C	552	560	Right-handed alpha
Helix 21	AC3	B	7	16	Right-handed alpha
Helix 22	AC4	B	21	31	Right-handed alpha
Helix 23	AC5	B	55	59	Right-handed 310
Helix 24	AC6	B	60	72	Right-handed alpha
Helix 25	AC7	B	121	135	Right-handed alpha
Helix 26	AC8	B	196	200	Right-handed 310
Helix 27	AC9	B	250	264	Right-handed alpha
Helix 28	AD1	B	312	320	Right-handed alpha
Helix 29	AD2	B	325	335	Right-handed alpha
Helix 30	AD3	B	361	374	Right-handed alpha
Helix 31	AD4	B	375	378	Right-handed 310
Helix 32	AD5	B	394	405	Right-handed alpha
Helix 33	AD6	B	417	423	Right-handed alpha
Helix 34	AD7	B	466	475	Right-handed alpha
Helix 35	AD8	B	500	502	Right-handed 310
Helix 36	AD9	B	523	535	Right-handed alpha
Helix 37	AE1	B	542	549	Right-handed alpha
Helix 38	AE2	B	594	601	Right-handed alpha
Helix 39	AE3	D	10	16	Right-handed alpha
Helix 40	AE4	D	24	32	Right-handed alpha
Helix 41	AE5	D	55	59	Right-handed 310
Helix 42	AE6	D	60	72	Right-handed alpha
Helix 43	AE7	D	121	138	Right-handed alpha
Helix 44	AE8	D	248	261	Right-handed alpha
Helix 45	AE9	D	312	320	Right-handed alpha
Helix 46	AF1	D	325	335	Right-handed alpha
Helix 47	AF2	D	362	374	Right-handed alpha
Helix 48	AF3	D	375	378	Right-handed 310
Helix 49	AF4	D	395	404	Right-handed alpha
Helix 50	AF5	D	417	422	Right-handed alpha
Helix 51	AF6	D	466	475	Right-handed alpha
Helix 52	AF7	D	521	537	Right-handed alpha
Helix 53	AF8	D	594	601	Right-handed alpha

There are 14 sheets in PDB entry 7DPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	439	448	parallel
Strand 3	A	460	471	anti-parallel
Strand 4	A	543	551	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	D	451	452	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	507	512	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	439	445	parallel
Strand 3	C	463	471	anti-parallel
Strand 4	C	543	551	anti-parallel
Strand 5	C	525	527	anti-parallel
Strand 6	C	507	512	anti-parallel
Strand 7	C	493	499	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	409	411	anti-parallel
Strand 3	C	362	363	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	311	first strand
Strand 2	B	347	352	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	484	495	parallel
Strand 3	B	504	515	anti-parallel
Strand 4	B	607	613	anti-parallel
Strand 5	B	588	593	anti-parallel
Strand 6	B	570	579	anti-parallel
Strand 7	B	561	564	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	416	first strand
Strand 2	B	461	462	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	44	45	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	241	244	anti-parallel
Strand 3	D	149	151	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	311	first strand
Strand 2	D	347	352	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	484	491	parallel
Strand 3	D	508	515	anti-parallel
Strand 4	D	607	613	anti-parallel
Strand 5	D	586	593	anti-parallel
Strand 6	D	570	580	anti-parallel
Strand 7	D	560	564	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	416	first strand
Strand 2	D	461	462	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	504	505	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DPI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPI