Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DPM entry

There are 12 chains in PDB entry 7DPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1CYS 230
B
ASP 1CYS 214
C
THR 333LYS 528
D
GLU 1LYS 228
E
ASP 1CYS 214
F
THR 333PRO 527
G
GLU 1LYS 228
H
ASP 1CYS 214
I
THR 333PRO 527
J
GLU 1PRO 227
K
ASP 1GLY 212
L
THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7DPM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
A
170 172Right-handed 310
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
215 218Right-handed 310
Helix 8
AA8
B
79 83Right-handed 310
Helix 9
AA9
B
121 128Right-handed alpha
Helix 10
AB1
B
183 188Right-handed alpha
Helix 11
AB2
C
337 343Right-handed alpha
Helix 12
AB3
C
364 370Right-handed alpha
Helix 13
AB4
C
383 387Right-handed 310
Helix 14
AB5
C
405 410Right-handed 310
Helix 15
AB6
C
416 422Right-handed alpha
Helix 16
AB7
C
438 443Right-handed alpha
Helix 17
AB8
C
502 505Right-handed 310
Helix 18
AB9
D
28 30Right-handed 310
Helix 19
AC1
D
62 65Right-handed 310
Helix 20
AC2
D
87 91Right-handed 310
Helix 21
AC3
D
170 172Right-handed 310
Helix 22
AC4
D
201 203Right-handed 310
Helix 23
AC5
D
215 218Right-handed 310
Helix 24
AC6
E
79 83Right-handed 310
Helix 25
AC7
E
121 128Right-handed alpha
Helix 26
AC8
E
183 188Right-handed alpha
Helix 27
AC9
F
337 343Right-handed alpha
Helix 28
AD1
F
364 370Right-handed alpha
Helix 29
AD2
F
405 410Right-handed 310
Helix 30
AD3
F
416 422Right-handed alpha
Helix 31
AD4
F
438 443Right-handed alpha
Helix 32
AD5
F
502 505Right-handed 310
Helix 33
AD6
G
28 30Right-handed 310
Helix 34
AD7
G
62 65Right-handed 310
Helix 35
AD8
G
87 91Right-handed 310
Helix 36
AD9
G
141 145Right-handed 310
Helix 37
AE1
G
170 172Right-handed 310
Helix 38
AE2
G
201 203Right-handed 310
Helix 39
AE3
G
215 218Right-handed 310
Helix 40
AE4
H
79 83Right-handed 310
Helix 41
AE5
H
121 128Right-handed alpha
Helix 42
AE6
H
183 188Right-handed alpha
Helix 43
AE7
I
337 343Right-handed alpha
Helix 44
AE8
I
364 370Right-handed alpha
Helix 45
AE9
I
383 387Right-handed 310
Helix 46
AF1
I
404 408Right-handed alpha
Helix 47
AF2
I
416 422Right-handed alpha
Helix 48
AF3
I
438 443Right-handed alpha
Helix 49
AF4
I
502 505Right-handed 310
Helix 50
AF5
J
28 30Right-handed 310
Helix 51
AF6
J
62 65Right-handed 310
Helix 52
AF7
J
87 91Right-handed 310
Helix 53
AF8
J
170 172Right-handed 310
Helix 54
AF9
J
201 203Right-handed 310
Helix 55
AG1
K
79 83Right-handed 310
Helix 56
AG2
K
121 128Right-handed alpha
Helix 57
AG3
K
183 188Right-handed alpha
Helix 58
AG4
L
337 343Right-handed alpha
Helix 59
AG5
L
364 370Right-handed alpha
Helix 60
AG6
L
405 410Right-handed 310
Helix 61
AG7
L
416 422Right-handed alpha
Helix 62
AG8
L
438 443Right-handed alpha
Helix 63
AG9
L
502 505Right-handed 310
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There are 56 sheets in PDB entry 7DPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 12first strand
Strand 2
A
121 125parallel
Strand 3
A
92 101anti-parallel
Strand 4
A
32 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 107first strand
Strand 2
C
376 380anti-parallel
Strand 3
C
431 437anti-parallel
Strand 4
C
507 516anti-parallel
Strand 5
C
394 403anti-parallel
Strand 6
C
354 358anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
134 138first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
177 179anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
134 138first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
183 184anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 168first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
219 224anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 48anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
97 98anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 118first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
159 163anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 155first strand
Strand 2
B
144 150anti-parallel
Strand 3
B
191 198anti-parallel
Strand 4
B
205 210anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
361 362first strand
Strand 2
C
524 525parallel
Strand 3
C
391 392anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
473 474first strand
Strand 2
C
488 489anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 103anti-parallel
Strand 4
D
32 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 103anti-parallel
Strand 4
D
106 107anti-parallel
Strand 5
F
376 380anti-parallel
Strand 6
F
431 437anti-parallel
Strand 7
F
507 516anti-parallel
Strand 8
F
394 403anti-parallel
Strand 9
F
354 358anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
134 138first strand
Strand 2
D
149 159anti-parallel
Strand 3
D
190 199anti-parallel
Strand 4
D
177 179anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
134 138first strand
Strand 2
D
149 159anti-parallel
Strand 3
D
190 199anti-parallel
Strand 4
D
183 184anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
165 168first strand
Strand 2
D
209 214anti-parallel
Strand 3
D
219 224anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
62 67anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 13first strand
Strand 2
E
102 106parallel
Strand 3
E
85 90anti-parallel
Strand 4
E
33 38anti-parallel
Strand 5
E
45 48anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 13first strand
Strand 2
E
102 106parallel
Strand 3
E
85 90anti-parallel
Strand 4
E
97 98anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
114 118first strand
Strand 2
E
129 139anti-parallel
Strand 3
E
173 182anti-parallel
Strand 4
E
159 163anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
153 155first strand
Strand 2
E
144 150anti-parallel
Strand 3
E
191 198anti-parallel
Strand 4
E
205 210anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
361 362first strand
Strand 2
F
524 525parallel
Strand 3
F
391 392anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
452 454first strand
Strand 2
F
492 494anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
465 467first strand
Strand 2
H
153 156parallel
Strand 3
H
144 150anti-parallel
Strand 4
H
191 198anti-parallel
Strand 5
H
205 210anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
473 474first strand
Strand 2
F
488 489anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 7first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
78 83anti-parallel
Strand 4
G
68 73anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 12first strand
Strand 2
G
121 125parallel
Strand 3
G
92 101anti-parallel
Strand 4
G
32 39anti-parallel
Strand 5
G
45 51anti-parallel
Strand 6
G
58 60anti-parallel
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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
106 107first strand
Strand 2
I
376 380anti-parallel
Strand 3
I
431 437anti-parallel
Strand 4
I
507 516anti-parallel
Strand 5
I
394 403anti-parallel
Strand 6
I
354 358anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
134 138first strand
Strand 2
G
149 159anti-parallel
Strand 3
G
190 199anti-parallel
Strand 4
G
177 179anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
134 138first strand
Strand 2
G
149 159anti-parallel
Strand 3
G
190 199anti-parallel
Strand 4
G
183 184anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
165 168first strand
Strand 2
G
209 214anti-parallel
Strand 3
G
219 224anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
70 75anti-parallel
Strand 4
H
62 67anti-parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 13first strand
Strand 2
H
102 106parallel
Strand 3
H
85 90anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
45 48anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 13first strand
Strand 2
H
102 106parallel
Strand 3
H
85 90anti-parallel
Strand 4
H
97 98anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
114 118first strand
Strand 2
H
129 139anti-parallel
Strand 3
H
173 182anti-parallel
Strand 4
H
159 163anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
361 362first strand
Strand 2
I
524 525parallel
Strand 3
I
391 392anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
452 454first strand
Strand 2
I
492 494anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
473 474first strand
Strand 2
I
488 489anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
78 83anti-parallel
Strand 4
J
68 73anti-parallel
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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
11 12first strand
Strand 2
J
121 125parallel
Strand 3
J
92 101anti-parallel
Strand 4
J
32 39anti-parallel
Strand 5
J
45 51anti-parallel
Strand 6
J
58 60anti-parallel
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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
106 107first strand
Strand 2
L
376 380anti-parallel
Strand 3
L
431 437anti-parallel
Strand 4
L
507 516anti-parallel
Strand 5
L
394 403anti-parallel
Strand 6
L
354 358anti-parallel
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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
149 159first strand
Strand 2
J
190 199anti-parallel
Strand 3
J
177 179anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
149 159first strand
Strand 2
J
190 199anti-parallel
Strand 3
J
183 184anti-parallel
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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
165 168first strand
Strand 2
J
209 214anti-parallel
Strand 3
J
219 224anti-parallel
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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
4 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
70 75anti-parallel
Strand 4
K
62 67anti-parallel
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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
10 12first strand
Strand 2
K
102 105parallel
Strand 3
K
85 90anti-parallel
Strand 4
K
33 38anti-parallel
Strand 5
K
45 48anti-parallel
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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
10 12first strand
Strand 2
K
102 105parallel
Strand 3
K
85 90anti-parallel
Strand 4
K
97 98anti-parallel
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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
114 118first strand
Strand 2
K
129 139anti-parallel
Strand 3
K
173 182anti-parallel
Strand 4
K
159 163anti-parallel
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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
153 154first strand
Strand 2
K
144 150anti-parallel
Strand 3
K
191 198anti-parallel
Strand 4
K
205 210anti-parallel
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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
361 362first strand
Strand 2
L
524 525parallel
Strand 3
L
391 392anti-parallel
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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
452 454first strand
Strand 2
L
492 494anti-parallel
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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
473 474first strand
Strand 2
L
488 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il