Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DPM entry

There are 12 chains in PDB entry 7DPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	CYS 230
B	ASP 1	CYS 214
C	THR 333	LYS 528
D	GLU 1	LYS 228
E	ASP 1	CYS 214
F	THR 333	PRO 527
G	GLU 1	LYS 228
H	ASP 1	CYS 214
I	THR 333	PRO 527
J	GLU 1	PRO 227
K	ASP 1	GLY 212
L	THR 333	PRO 527

There are 63 helices in PDB entry 7DPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	30	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	141	145	Right-handed 310
Helix 5	AA5	A	170	172	Right-handed 310
Helix 6	AA6	A	201	203	Right-handed 310
Helix 7	AA7	A	215	218	Right-handed 310
Helix 8	AA8	B	79	83	Right-handed 310
Helix 9	AA9	B	121	128	Right-handed alpha
Helix 10	AB1	B	183	188	Right-handed alpha
Helix 11	AB2	C	337	343	Right-handed alpha
Helix 12	AB3	C	364	370	Right-handed alpha
Helix 13	AB4	C	383	387	Right-handed 310
Helix 14	AB5	C	405	410	Right-handed 310
Helix 15	AB6	C	416	422	Right-handed alpha
Helix 16	AB7	C	438	443	Right-handed alpha
Helix 17	AB8	C	502	505	Right-handed 310
Helix 18	AB9	D	28	30	Right-handed 310
Helix 19	AC1	D	62	65	Right-handed 310
Helix 20	AC2	D	87	91	Right-handed 310
Helix 21	AC3	D	170	172	Right-handed 310
Helix 22	AC4	D	201	203	Right-handed 310
Helix 23	AC5	D	215	218	Right-handed 310
Helix 24	AC6	E	79	83	Right-handed 310
Helix 25	AC7	E	121	128	Right-handed alpha
Helix 26	AC8	E	183	188	Right-handed alpha
Helix 27	AC9	F	337	343	Right-handed alpha
Helix 28	AD1	F	364	370	Right-handed alpha
Helix 29	AD2	F	405	410	Right-handed 310
Helix 30	AD3	F	416	422	Right-handed alpha
Helix 31	AD4	F	438	443	Right-handed alpha
Helix 32	AD5	F	502	505	Right-handed 310
Helix 33	AD6	G	28	30	Right-handed 310
Helix 34	AD7	G	62	65	Right-handed 310
Helix 35	AD8	G	87	91	Right-handed 310
Helix 36	AD9	G	141	145	Right-handed 310
Helix 37	AE1	G	170	172	Right-handed 310
Helix 38	AE2	G	201	203	Right-handed 310
Helix 39	AE3	G	215	218	Right-handed 310
Helix 40	AE4	H	79	83	Right-handed 310
Helix 41	AE5	H	121	128	Right-handed alpha
Helix 42	AE6	H	183	188	Right-handed alpha
Helix 43	AE7	I	337	343	Right-handed alpha
Helix 44	AE8	I	364	370	Right-handed alpha
Helix 45	AE9	I	383	387	Right-handed 310
Helix 46	AF1	I	404	408	Right-handed alpha
Helix 47	AF2	I	416	422	Right-handed alpha
Helix 48	AF3	I	438	443	Right-handed alpha
Helix 49	AF4	I	502	505	Right-handed 310
Helix 50	AF5	J	28	30	Right-handed 310
Helix 51	AF6	J	62	65	Right-handed 310
Helix 52	AF7	J	87	91	Right-handed 310
Helix 53	AF8	J	170	172	Right-handed 310
Helix 54	AF9	J	201	203	Right-handed 310
Helix 55	AG1	K	79	83	Right-handed 310
Helix 56	AG2	K	121	128	Right-handed alpha
Helix 57	AG3	K	183	188	Right-handed alpha
Helix 58	AG4	L	337	343	Right-handed alpha
Helix 59	AG5	L	364	370	Right-handed alpha
Helix 60	AG6	L	405	410	Right-handed 310
Helix 61	AG7	L	416	422	Right-handed alpha
Helix 62	AG8	L	438	443	Right-handed alpha
Helix 63	AG9	L	502	505	Right-handed 310

There are 56 sheets in PDB entry 7DPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	431	437	anti-parallel
Strand 4	C	507	516	anti-parallel
Strand 5	C	394	403	anti-parallel
Strand 6	C	354	358	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	219	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	144	150	anti-parallel
Strand 3	B	191	198	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	121	125	parallel
Strand 3	D	92	103	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	121	125	parallel
Strand 3	D	92	103	anti-parallel
Strand 4	D	106	107	anti-parallel
Strand 5	F	376	380	anti-parallel
Strand 6	F	431	437	anti-parallel
Strand 7	F	507	516	anti-parallel
Strand 8	F	394	403	anti-parallel
Strand 9	F	354	358	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	190	199	anti-parallel
Strand 4	D	177	179	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	190	199	anti-parallel
Strand 4	D	183	184	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	209	214	anti-parallel
Strand 3	D	219	224	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	173	182	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	144	150	anti-parallel
Strand 3	E	191	198	anti-parallel
Strand 4	E	205	210	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel
Strand 3	F	391	392	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	465	467	first strand
Strand 2	H	153	156	parallel
Strand 3	H	144	150	anti-parallel
Strand 4	H	191	198	anti-parallel
Strand 5	H	205	210	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	107	first strand
Strand 2	I	376	380	anti-parallel
Strand 3	I	431	437	anti-parallel
Strand 4	I	507	516	anti-parallel
Strand 5	I	394	403	anti-parallel
Strand 6	I	354	358	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	149	159	anti-parallel
Strand 3	G	190	199	anti-parallel
Strand 4	G	177	179	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	149	159	anti-parallel
Strand 3	G	190	199	anti-parallel
Strand 4	G	183	184	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	168	first strand
Strand 2	G	209	214	anti-parallel
Strand 3	G	219	224	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	48	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	362	first strand
Strand 2	I	524	525	parallel
Strand 3	I	391	392	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	452	454	first strand
Strand 2	I	492	494	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	473	474	first strand
Strand 2	I	488	489	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	121	125	parallel
Strand 3	J	92	101	anti-parallel
Strand 4	J	32	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	107	first strand
Strand 2	L	376	380	anti-parallel
Strand 3	L	431	437	anti-parallel
Strand 4	L	507	516	anti-parallel
Strand 5	L	394	403	anti-parallel
Strand 6	L	354	358	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	159	first strand
Strand 2	J	190	199	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	159	first strand
Strand 2	J	190	199	anti-parallel
Strand 3	J	183	184	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	168	first strand
Strand 2	J	209	214	anti-parallel
Strand 3	J	219	224	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	102	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	48	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	102	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	118	first strand
Strand 2	K	129	139	anti-parallel
Strand 3	K	173	182	anti-parallel
Strand 4	K	159	163	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	153	154	first strand
Strand 2	K	144	150	anti-parallel
Strand 3	K	191	198	anti-parallel
Strand 4	K	205	210	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	361	362	first strand
Strand 2	L	524	525	parallel
Strand 3	L	391	392	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	452	454	first strand
Strand 2	L	492	494	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	473	474	first strand
Strand 2	L	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPM