Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DPW entry

There are 4 chains in PDB entry 7DPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 556
B	MET 1	GLN 556
C	MET 1	GLN 556
D	MET 1	GLN 556

There are 96 helices in PDB entry 7DPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	30	Right-handed alpha
Helix 2	AA2	A	68	79	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	90	103	Right-handed alpha
Helix 5	AA5	A	112	129	Right-handed alpha
Helix 6	AA6	A	155	169	Right-handed alpha
Helix 7	AA7	A	170	172	Right-handed 310
Helix 8	AA8	A	193	207	Right-handed alpha
Helix 9	AA9	A	222	234	Right-handed alpha
Helix 10	AB1	A	236	238	Right-handed 310
Helix 11	AB2	A	248	250	Right-handed 310
Helix 12	AB3	A	251	259	Right-handed alpha
Helix 13	AB4	A	260	269	Right-handed alpha
Helix 14	AB5	A	282	293	Right-handed alpha
Helix 15	AB6	A	314	329	Right-handed alpha
Helix 16	AB7	A	343	350	Right-handed alpha
Helix 17	AB8	A	350	363	Right-handed alpha
Helix 18	AB9	A	377	390	Right-handed alpha
Helix 19	AC1	A	400	415	Right-handed alpha
Helix 20	AC2	A	462	468	Right-handed alpha
Helix 21	AC3	A	485	492	Right-handed alpha
Helix 22	AC4	A	526	530	Right-handed 310
Helix 23	AC5	A	537	547	Right-handed alpha
Helix 24	AC6	A	550	556	Right-handed alpha
Helix 25	AC7	B	15	30	Right-handed alpha
Helix 26	AC8	B	68	79	Right-handed alpha
Helix 27	AC9	B	83	85	Right-handed 310
Helix 28	AD1	B	90	103	Right-handed alpha
Helix 29	AD2	B	112	129	Right-handed alpha
Helix 30	AD3	B	155	169	Right-handed alpha
Helix 31	AD4	B	170	172	Right-handed 310
Helix 32	AD5	B	193	207	Right-handed alpha
Helix 33	AD6	B	222	234	Right-handed alpha
Helix 34	AD7	B	236	238	Right-handed 310
Helix 35	AD8	B	248	250	Right-handed 310
Helix 36	AD9	B	251	259	Right-handed alpha
Helix 37	AE1	B	260	269	Right-handed alpha
Helix 38	AE2	B	282	293	Right-handed alpha
Helix 39	AE3	B	314	329	Right-handed alpha
Helix 40	AE4	B	343	350	Right-handed alpha
Helix 41	AE5	B	350	363	Right-handed alpha
Helix 42	AE6	B	377	390	Right-handed alpha
Helix 43	AE7	B	400	415	Right-handed alpha
Helix 44	AE8	B	462	468	Right-handed alpha
Helix 45	AE9	B	485	492	Right-handed alpha
Helix 46	AF1	B	526	530	Right-handed 310
Helix 47	AF2	B	537	547	Right-handed alpha
Helix 48	AF3	B	550	556	Right-handed alpha
Helix 49	AF4	C	15	30	Right-handed alpha
Helix 50	AF5	C	68	79	Right-handed alpha
Helix 51	AF6	C	83	85	Right-handed 310
Helix 52	AF7	C	90	103	Right-handed alpha
Helix 53	AF8	C	112	129	Right-handed alpha
Helix 54	AF9	C	155	169	Right-handed alpha
Helix 55	AG1	C	170	172	Right-handed 310
Helix 56	AG2	C	193	207	Right-handed alpha
Helix 57	AG3	C	222	234	Right-handed alpha
Helix 58	AG4	C	236	238	Right-handed 310
Helix 59	AG5	C	248	250	Right-handed 310
Helix 60	AG6	C	251	259	Right-handed alpha
Helix 61	AG7	C	260	269	Right-handed alpha
Helix 62	AG8	C	282	293	Right-handed alpha
Helix 63	AG9	C	314	329	Right-handed alpha
Helix 64	AH1	C	343	350	Right-handed alpha
Helix 65	AH2	C	350	363	Right-handed alpha
Helix 66	AH3	C	377	390	Right-handed alpha
Helix 67	AH4	C	400	415	Right-handed alpha
Helix 68	AH5	C	462	468	Right-handed alpha
Helix 69	AH6	C	485	492	Right-handed alpha
Helix 70	AH7	C	526	530	Right-handed 310
Helix 71	AH8	C	537	547	Right-handed alpha
Helix 72	AH9	C	550	556	Right-handed alpha
Helix 73	AI1	D	15	30	Right-handed alpha
Helix 74	AI2	D	68	79	Right-handed alpha
Helix 75	AI3	D	83	85	Right-handed 310
Helix 76	AI4	D	90	103	Right-handed alpha
Helix 77	AI5	D	112	129	Right-handed alpha
Helix 78	AI6	D	155	169	Right-handed alpha
Helix 79	AI7	D	170	172	Right-handed 310
Helix 80	AI8	D	193	207	Right-handed alpha
Helix 81	AI9	D	222	234	Right-handed alpha
Helix 82	AJ1	D	236	238	Right-handed 310
Helix 83	AJ2	D	248	250	Right-handed 310
Helix 84	AJ3	D	251	259	Right-handed alpha
Helix 85	AJ4	D	260	269	Right-handed alpha
Helix 86	AJ5	D	282	293	Right-handed alpha
Helix 87	AJ6	D	314	329	Right-handed alpha
Helix 88	AJ7	D	343	350	Right-handed alpha
Helix 89	AJ8	D	350	363	Right-handed alpha
Helix 90	AJ9	D	377	390	Right-handed alpha
Helix 91	AK1	D	400	415	Right-handed alpha
Helix 92	AK2	D	462	468	Right-handed alpha
Helix 93	AK3	D	485	492	Right-handed alpha
Helix 94	AK4	D	526	530	Right-handed 310
Helix 95	AK5	D	537	547	Right-handed alpha
Helix 96	AK6	D	550	556	Right-handed alpha

There are 16 sheets in PDB entry 7DPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	141	146	parallel
Strand 4	A	2	8	parallel
Strand 5	A	174	181	parallel
Strand 6	A	212	216	parallel
Strand 7	A	240	243	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	67	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	338	first strand
Strand 2	A	298	305	parallel
Strand 3	A	366	369	parallel
Strand 4	A	395	398	parallel
Strand 5	A	520	523	parallel
Strand 6	A	511	514	anti-parallel
Strand 7	A	497	502	anti-parallel
Strand 8	A	449	457	anti-parallel
Strand 9	A	473	480	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	482	484	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	34	40	parallel
Strand 3	B	141	146	parallel
Strand 4	B	2	8	parallel
Strand 5	B	174	181	parallel
Strand 6	B	212	216	parallel
Strand 7	B	240	243	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	66	67	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	338	first strand
Strand 2	B	298	305	parallel
Strand 3	B	366	369	parallel
Strand 4	B	395	398	parallel
Strand 5	B	520	523	parallel
Strand 6	B	511	514	anti-parallel
Strand 7	B	497	502	anti-parallel
Strand 8	B	449	457	anti-parallel
Strand 9	B	473	480	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	482	484	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	141	146	parallel
Strand 4	C	2	8	parallel
Strand 5	C	174	181	parallel
Strand 6	C	212	216	parallel
Strand 7	C	240	243	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	67	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	298	305	parallel
Strand 3	C	366	369	parallel
Strand 4	C	395	398	parallel
Strand 5	C	520	523	parallel
Strand 6	C	511	514	anti-parallel
Strand 7	C	497	502	anti-parallel
Strand 8	C	449	457	anti-parallel
Strand 9	C	473	480	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	482	484	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	34	40	parallel
Strand 3	D	141	146	parallel
Strand 4	D	2	8	parallel
Strand 5	D	174	181	parallel
Strand 6	D	212	216	parallel
Strand 7	D	240	243	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	66	67	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	338	first strand
Strand 2	D	298	305	parallel
Strand 3	D	366	369	parallel
Strand 4	D	395	398	parallel
Strand 5	D	520	523	parallel
Strand 6	D	511	514	anti-parallel
Strand 7	D	497	502	anti-parallel
Strand 8	D	449	457	anti-parallel
Strand 9	D	473	480	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	435	first strand
Strand 2	D	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPW