Analysis of interatomic Contacts of Structural Units in PDB entry:
7DPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DPZ entry

There are 5 chains in PDB entry 7DPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 VAL 11THR 277
2
 SER 10SER 261
3
 GLY 1TYR 237
4
 GLN 4LEU 68
K
 LEU 20VAL 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7DPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
33 37Right-handed 310
Helix 2
AA2
1
43 47Right-handed 310
Helix 3
AA3
1
59 63Right-handed 310
Helix 4
AA4
1
64 69Right-handed alpha
Helix 5
AA5
1
97 106Right-handed alpha
Helix 6
AA6
2
83 85Right-handed 310
Helix 7
AA7
2
89 99Right-handed alpha
Helix 8
AA8
2
171 175Right-handed 310
Helix 9
AA9
2
180 187Right-handed 310
Helix 10
AB1
3
42 46Right-handed 310
Helix 11
AB2
3
64 69Right-handed 310
Helix 12
AB3
3
100 105Right-handed alpha
Helix 13
AB4
3
144 149Right-handed alpha
Helix 14
AB5
4
49 53Right-handed 310
Helix 15
AB6
K
97 101Right-handed 310
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There are 18 sheets in PDB entry 7DPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
72 80first strand
Strand 2
1
229 237anti-parallel
Strand 3
1
118 124anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
179 180first strand
Strand 2
1
107 115anti-parallel
Strand 3
1
189 190anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
179 180first strand
Strand 2
1
107 115anti-parallel
Strand 3
1
240 247anti-parallel
Strand 4
3
39 40anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
166 170first strand
Strand 2
1
138 142anti-parallel
Strand 3
1
217 220anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 70first strand
Strand 2
2
242 247anti-parallel
Strand 3
2
103 111anti-parallel
Strand 4
2
199 204anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 70first strand
Strand 2
2
242 247anti-parallel
Strand 3
2
103 111anti-parallel
Strand 4
2
249 253anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
153 154first strand
Strand 2
2
78 81anti-parallel
Strand 3
2
222 226anti-parallel
Strand 4
2
121 126anti-parallel
Strand 5
2
189 193anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 73first strand
Strand 2
3
207 212anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
164 168anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 73first strand
Strand 2
3
207 212anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
215 216anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
81 86first strand
Strand 2
3
189 199anti-parallel
Strand 3
3
127 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
109 111anti-parallel
Strand 3
3
221 223anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
5 7first strand
Strand 2
4
26 28anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
21 22first strand
Strand 2
K
43 44anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
26 30first strand
Strand 2
K
132 136parallel
Strand 3
K
116 119anti-parallel
Strand 4
K
58 60anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
37 39first strand
Strand 2
K
105 107anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
54 55first strand
Strand 2
K
73 75anti-parallel
Strand 3
K
78 80anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
122 124first strand
Strand 2
K
127 129anti-parallel
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